profiles/package.mask: drop last-rited pkgs

Signed-off-by: Aaron Bauman <bman@gentoo.org>

6 files changed, 0 insertions, 145 deletions

diff --git a/sci-chemistry/parassign/Manifest b/sci-chemistry/parassign/Manifest
deleted file mode 100644
index 2407156632e3..000000000000
--- a/sci-chemistry/parassign/Manifest
+++ /dev/null
@@ -1 +0,0 @@
-DIST PARAssign_Linux_x64_86.tgz 76693208 BLAKE2B 9141b7f3e6b50efd84cfc2af13c170946220b3f02f90422c4759a6aab8073a0d28cf44e045f305f392055816e50052826dd403f1d71ff7edb04950bf5dfc5f2b SHA512 63018b0f1e3ce7821cebb90cd59ef5fdfa44b7ce6776956184b55a6247009f5e9df435332772dfa0db7294308c4d930ff0104daf45a46df709fb132dac10bd79
diff --git a/sci-chemistry/parassign/metadata.xml b/sci-chemistry/parassign/metadata.xml
deleted file mode 100644
index f230593f73e9..000000000000
--- a/sci-chemistry/parassign/metadata.xml
+++ /dev/null
@@ -1,27 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-  <maintainer type="project">
-    <email>sci-chemistry@gentoo.org</email>
-    <name>Gentoo Chemistry Project</name>
-  </maintainer>
-  <longdescription>
-The use of paramagnetic NMR data for the refinement of structures of proteins 
-and protein complexes is widespread. However, the power of paramagnetism for 
-protein assignment has not yet been fully exploited. PARAssign is software that 
-uses pseudocontact shift data derived from several paramagnetic centers attached
-to the protein to obtain amide and methyl assignments. The ability of PARAssign 
-to perform assignment when the positions of the paramagnetic centers are known 
-and unknown is demonstrated. PARAssign has been tested using synthetic data for 
-methyl assignment of a 47 kDa protein, and using both synthetic and experimental
-data for amide assignment of a 14 kDa protein. The complex fitting space 
-involved in such an assignment procedure necessitates that good starting 
-conditions are found, both regarding placement and strength of paramagnetic 
-centers. These starting conditions are obtained through automated tensor 
-placement and user-defined tensor parameters. The results presented herein 
-demonstrate that PARAssign is able to successfully perform resonance assignment
-in large systems with a high degree of reliability. This software provides a 
-method for obtaining the assignments of large systems, which may previously have
-been unassignable, by using 2D NMR spectral data and a known protein structure.
-</longdescription>
-</pkgmetadata>
diff --git a/sci-chemistry/parassign/parassign-20130522.ebuild b/sci-chemistry/parassign/parassign-20130522.ebuild
deleted file mode 100644
index c49d09b2ab0a..000000000000
--- a/sci-chemistry/parassign/parassign-20130522.ebuild
+++ /dev/null
@@ -1,64 +0,0 @@
-# Copyright 1999-2015 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-PYTHON_COMPAT=( python2_7 )
-
-inherit distutils-r1 python-r1
-
-DESCRIPTION="Assign protein nuclei solely on the basis of pseudocontact shifts (PCS)"
-HOMEPAGE="http://protchem.lic.leidenuniv.nl/software/parassign/registration"
-SRC_URI="PARAssign_Linux_x64_86.tgz"
-RESTRICT="fetch"
-
-SLOT="0"
-LICENSE="Apache-2.0"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-IUSE=""
-
-REQUIRED_USE="${PYTHON_REQUIRED_USE}"
-
-RDEPEND="${PYTHON_DEPS}"
-DEPEND="${RDEPEND}
-	dev-python/cython[${PYTHON_USEDEP}]
-	dev-python/matplotlib[${PYTHON_USEDEP}]
-	dev-python/numpy[${PYTHON_USEDEP}]
-	dev-python/scientificpython[${PYTHON_USEDEP}]
-	sci-biology/biopython[${PYTHON_USEDEP}]
-	sci-libs/scipy[${PYTHON_USEDEP}]"
-
-S="${WORKDIR}"/PARAssign_Linux_x64_86/
-
-src_prepare() {
-	sed \
-		-e '1i#!/usr/bin/python2' \
-		-i code/*py || die
-
-	if use x86; then
-		sed \
-			-e "s:munkres64:munkres:g" \
-			-i modules/setup.py || die
-	elif use amd64; then
-		sed \
-			-e "s:munkres:munkres64:g" \
-			-i code/*py || die
-	fi
-	cd modules || die
-	rm *o *c || die
-	distutils-r1_src_prepare
-}
-
-src_compile() {
-	cd modules || die
-	distutils-r1_src_compile
-}
-
-src_install() {
-	python_foreach_impl python_doscript code/* || die
-
-	dodoc PARAssign_Tutorial.pdf README
-
-	cd modules || die
-	distutils-r1_src_install
-}
diff --git a/sci-chemistry/pymol-plugins-psico/Manifest b/sci-chemistry/pymol-plugins-psico/Manifest
deleted file mode 100644
index 3efb39319f8c..000000000000
--- a/sci-chemistry/pymol-plugins-psico/Manifest
+++ /dev/null
@@ -1 +0,0 @@
-DIST pymol-plugins-psico-3.1.tar.gz 76136 BLAKE2B d1218b0d9da9326a47fb5e0d6268c43ee2d6266066260b83686aa664c500609fb87d61886a83d46a59a2270c3671cfdb7e2f3f761f7898b52932d5f92b2b4b31 SHA512 b0f57049ea6fc290a5abd48e0c98d4fda3c3f947898597b80e11cb3ab9ac14038aade0a016b21a525bf0ab4cf68e3be35c64b8ec34422268058414c20a755b0e
diff --git a/sci-chemistry/pymol-plugins-psico/metadata.xml b/sci-chemistry/pymol-plugins-psico/metadata.xml
deleted file mode 100644
index 29f0c024a2f1..000000000000
--- a/sci-chemistry/pymol-plugins-psico/metadata.xml
+++ /dev/null
@@ -1,11 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-  <maintainer type="project">
-    <email>sci-chemistry@gentoo.org</email>
-    <name>Gentoo Chemistry Project</name>
-  </maintainer>
-  <upstream>
-    <remote-id type="github">speleo3/pymol-psico</remote-id>
-  </upstream>
-</pkgmetadata>
diff --git a/sci-chemistry/pymol-plugins-psico/pymol-plugins-psico-3.1-r1.ebuild b/sci-chemistry/pymol-plugins-psico/pymol-plugins-psico-3.1-r1.ebuild
deleted file mode 100644
index 0fca945ebee8..000000000000
--- a/sci-chemistry/pymol-plugins-psico/pymol-plugins-psico-3.1-r1.ebuild
+++ /dev/null
@@ -1,41 +0,0 @@
-# Copyright 1999-2015 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-PYTHON_COMPAT=( python2_7 )
-
-inherit distutils-r1 vcs-snapshot
-
-DESCRIPTION="Pymol ScrIpt COllection"
-HOMEPAGE="https://github.com/speleo3/pymol-psico/"
-SRC_URI="https://github.com/speleo3/pymol-psico/tarball/${PV} -> ${P}.tar.gz"
-
-SLOT="0"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-LICENSE="BSD-2"
-IUSE="minimal"
-
-RDEPEND="
-	dev-python/numpy[${PYTHON_USEDEP}]
-	sci-biology/biopython[${PYTHON_USEDEP}]
-	sci-libs/mmtk[${PYTHON_USEDEP}]
-	sci-chemistry/pymol[${PYTHON_USEDEP}]
-	!minimal? (
-		media-libs/qhull
-		media-video/mplayer
-		sci-biology/stride
-		sci-chemistry/dssp
-		sci-chemistry/mm-align
-		sci-chemistry/pdbmat
-		sci-chemistry/theseus
-		sci-chemistry/tm-align
-		sci-mathematics/diagrtb
-	)"
-
-pkg_postinst() {
-	if ! use minimal; then
-		elog "For full functionality you need to get DynDom from"
-		elog "http://fizz.cmp.uea.ac.uk/dyndom/dyndomMain.do"
-	fi
-}