diff options
| author |   Anna (cybertailor) Vyalkova <cyber+gentoo@sysrq.in> | 2022-05-30 21:53:12 +0500 |
|---|---|---|
| committer | Anna (cybertailor) Vyalkova <cyber+gentoo@sysrq.in> | 2022-05-30 22:46:56 +0500 |
| commit | 5876888c66bbb7100ab1f6c8717c5112364d396b (patch) | |
| tree | 2f25e04c8cb6b0bf62b458c97d80b27cb8f88c3d /sci-biology | |
| parent | sci-biology/geneathome: drop 1.10 (diff) | |
| download | guru-5876888c66bbb7100ab1f6c8717c5112364d396b.tar.gz guru-5876888c66bbb7100ab1f6c8717c5112364d396b.tar.bz2 guru-5876888c66bbb7100ab1f6c8717c5112364d396b.zip | |
sci-biology/geneathome: update to new BOINC
Signed-off-by: Anna (cybertailor) Vyalkova <cyber+gentoo@sysrq.in>
Diffstat (limited to 'sci-biology')
| -rw-r--r-- | sci-biology/geneathome/Manifest | 1 | ||||
| -rw-r--r-- | sci-biology/geneathome/files/makefile.patch | 2 | ||||
| -rw-r--r-- | sci-biology/geneathome/geneathome-1.10-r3.ebuild (renamed from sci-biology/geneathome/geneathome-1.10-r2.ebuild) | 17 |
3 files changed, 8 insertions, 12 deletions
diff --git a/sci-biology/geneathome/Manifest b/sci-biology/geneathome/Manifest index 5a086b395..806447644 100644 --- a/sci-biology/geneathome/Manifest +++ b/sci-biology/geneathome/Manifest @@ -1,2 +1 @@ -DIST boinc-7.16.16.tar.gz 49599131 BLAKE2B 819ab85c19a684144711f77e669b892aa73c006b81c1d7ef7adbd9d580e1e8473ae27b52dc17953ee677c70fc78ed15df936afd740e629715f30f2b81d84ea6f SHA512 dd7042e176d6506c70de7866556ae73b2f45734df92038086d5b0414751f3da08dc571c49f0c26d747d3fb2577674d3ff8cdec7d3563861eaaaa5af9c1db0a0e DIST geneathome-1.10.tar.gz 73686241 BLAKE2B 4a4e9930e3faeaf0b6d687d26adb3267af1a70096397e9e4001066a7029a854b95cd35b6779a0e6bcf6c9cb3ad662b5f9e6adf4ab9d608ed2d73c65d3dadc10b SHA512 c8c1bb65f0021d9c9d9f14375212c458694dbb21abbfa90f6b8fb958bc6d86a522bbe13846b5930f6df0a4e755256f2016c5edd4447ae147cb1381eccce06b9e diff --git a/sci-biology/geneathome/files/makefile.patch b/sci-biology/geneathome/files/makefile.patch index 236da461e..7025b694d 100644 --- a/sci-biology/geneathome/files/makefile.patch +++ b/sci-biology/geneathome/files/makefile.patch @@ -19,7 +19,7 @@ -CXXFLAGS += $(CFLAGS) -std=gnu++11 -LDFLAGS += $(ARCH) -L/usr/X11R6/lib -L. -static -LIBS ?= -static-libgcc -static-libstdc++ -pthread -Wl,-Bstatic -lbz2 -+CPPFLAGS += -I$(BOINC_DIR) -I$(BOINC_LIB_DIR) -I$(BOINC_API_DIR) -Isimd ++CPPFLAGS += -I$(BOINC_DIR) -Isimd +CXXFLAGS += -std=gnu++11 +LIBS ?= -pthread -lbz2 CXXSOURCES = BoincFile.cpp Graph.cpp boinc_functions.cpp utility.cpp pc.cpp main.cpp diff --git a/sci-biology/geneathome/geneathome-1.10-r2.ebuild b/sci-biology/geneathome/geneathome-1.10-r3.ebuild index 43ec78723..383549d5d 100644 --- a/sci-biology/geneathome/geneathome-1.10-r2.ebuild +++ b/sci-biology/geneathome/geneathome-1.10-r3.ebuild @@ -3,13 +3,12 @@ EAPI=8 -BOINC_SUBMODULE="samples/${PN}" BOINC_MASTER_URL="https://gene.disi.unitn.it/test/" BOINC_INVITATION_CODE="science@tn" BOINC_HELPTEXT=\ "gene@home is a part of TN-Grid BOINC project." -inherit boinc boinc-app toolchain-funcs +inherit boinc-app edo toolchain-funcs MY_PN="pc-boinc" COMMIT="3186afba409a" @@ -17,7 +16,7 @@ COMMIT="3186afba409a" DESCRIPTION="BOINC application for expanding Gene Regulatory Networks (GRN)" HOMEPAGE+=" https://bitbucket.org/francesco-asnicar/pc-boinc" SRC_URI="https://bitbucket.org/francesco-asnicar/${MY_PN}/get/${COMMIT}.tar.gz -> ${P}.tar.gz" -BOINC_S="francesco-asnicar-${MY_PN}-${COMMIT}" +S="${WORKDIR}/francesco-asnicar-${MY_PN}-${COMMIT}" LICENSE="sunpro public-domain" SLOT="0" @@ -32,11 +31,8 @@ DOCS=( Readme.md ) boinc-app_add_deps -boinc_require_source 7.16.16 -boinc_enable_autotools - src_prepare() { - boinc_src_prepare + default # error: inlining failed in call to ‘always_inline’ ‘int fprintf(FILE*, const char*, ...)’: target specific option mismatch sed -i src/main.cpp \ @@ -46,12 +42,13 @@ src_prepare() { src_compile() { tc-export CC CXX - emake -C src + + emake -C src BOINC_DIR="${ESYSROOT}"/usr/include/boinc } src_test() { - bash ./test_run.sh || die - bash ./test_run2.sh || die + edo bash ./test_run.sh + edo bash ./test_run2.sh } src_install() { |