diff options
Diffstat (limited to 'sci-biology')
-rw-r--r-- | sci-biology/ncbi-tools/ChangeLog | 8 | ||||
-rw-r--r-- | sci-biology/ncbi-tools/files/ncbi-tools-lop.patch | 15 | ||||
-rw-r--r-- | sci-biology/ncbi-tools/ncbi-tools-20050605-r2.ebuild | 4 | ||||
-rw-r--r-- | sci-biology/ncbi-tools/ncbi-tools-20050605.ebuild | 4 | ||||
-rw-r--r-- | sci-biology/ncbi-tools/ncbi-tools-20060507.ebuild | 4 |
5 files changed, 28 insertions, 7 deletions
diff --git a/sci-biology/ncbi-tools/ChangeLog b/sci-biology/ncbi-tools/ChangeLog index 861dddd08051..74e1ab0c323b 100644 --- a/sci-biology/ncbi-tools/ChangeLog +++ b/sci-biology/ncbi-tools/ChangeLog @@ -1,6 +1,12 @@ # ChangeLog for sci-biology/ncbi-tools # Copyright 2000-2006 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/ncbi-tools/ChangeLog,v 1.39 2006/06/26 17:24:32 ribosome Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/ncbi-tools/ChangeLog,v 1.40 2006/06/27 01:44:20 ribosome Exp $ + + 27 Jun 2006; Olivier Fisette <ribosome@gentoo.org> + -files/ncbi-tools-20050605-lop.patch, +files/ncbi-tools-lop.patch, + ncbi-tools-20050605.ebuild, ncbi-tools-20050605-r2.ebuild, + ncbi-tools-20060507.ebuild: + Fixed ppc64 lop patch (my mistake). *ncbi-tools-20060507 (26 Jun 2006) diff --git a/sci-biology/ncbi-tools/files/ncbi-tools-lop.patch b/sci-biology/ncbi-tools/files/ncbi-tools-lop.patch new file mode 100644 index 000000000000..867b203aecb1 --- /dev/null +++ b/sci-biology/ncbi-tools/files/ncbi-tools-lop.patch @@ -0,0 +1,15 @@ +--- platform/linux-power.ncbi.mk.bak 2005-08-04 22:45:13.000000000 -0500 ++++ platform/linux-power.ncbi.mk 2005-08-04 22:45:35.000000000 -0500 +@@ -9,10 +9,10 @@ + #it appears the flags above do not work anymore with newer libc, + #the new flags should work. Dima. 08/23/01 + NCBI_AR=ar +-NCBI_CC = xlc_r -w -qcpluscmt -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE ++NCBI_CC = gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE + NCBI_CFLAGS1 = -c + NCBI_LDFLAGS1 = -O3 -D_LARGE_FILES +-NCBI_OPTFLAG = -O3 -qmaxmem=-1 -D_LARGE_FILE ++NCBI_OPTFLAG = -O3 -D_LARGE_FILE + NCBI_BIN_MASTER = /vol/stcfs/rchen/LoP/ncbi/bin + NCBI_BIN_COPY = /vol/stcfs/rchen/LoP/ncbi/bin + NCBI_INCDIR = /vol/stcfs/rchen/LoP/ncbi/include diff --git a/sci-biology/ncbi-tools/ncbi-tools-20050605-r2.ebuild b/sci-biology/ncbi-tools/ncbi-tools-20050605-r2.ebuild index 6933cd0935e9..fcf51fe78cf6 100644 --- a/sci-biology/ncbi-tools/ncbi-tools-20050605-r2.ebuild +++ b/sci-biology/ncbi-tools/ncbi-tools-20050605-r2.ebuild @@ -1,6 +1,6 @@ # Copyright 1999-2006 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/ncbi-tools/ncbi-tools-20050605-r2.ebuild,v 1.3 2006/02/02 02:51:41 ribosome Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/ncbi-tools/ncbi-tools-20050605-r2.ebuild,v 1.4 2006/06/27 01:44:20 ribosome Exp $ inherit flag-o-matic toolchain-funcs eutils @@ -40,7 +40,7 @@ src_unpack() { if use ppc64; then cd "${S}" - epatch "${FILESDIR}"/${P}-lop.patch + epatch "${FILESDIR}"/${PN}-lop.patch fi if use mpi; then diff --git a/sci-biology/ncbi-tools/ncbi-tools-20050605.ebuild b/sci-biology/ncbi-tools/ncbi-tools-20050605.ebuild index 2dffbf36a223..c9baaa55d1eb 100644 --- a/sci-biology/ncbi-tools/ncbi-tools-20050605.ebuild +++ b/sci-biology/ncbi-tools/ncbi-tools-20050605.ebuild @@ -1,6 +1,6 @@ # Copyright 1999-2006 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/ncbi-tools/ncbi-tools-20050605.ebuild,v 1.11 2006/02/01 09:10:15 spyderous Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/ncbi-tools/ncbi-tools-20050605.ebuild,v 1.12 2006/06/27 01:44:20 ribosome Exp $ inherit flag-o-matic toolchain-funcs eutils @@ -36,7 +36,7 @@ pkg_setup() { src_unpack() { unpack ${A} - use ppc64 && cd ${S} && epatch ${FILESDIR}/${P}-lop.patch + use ppc64 && cd ${S} && epatch ${FILESDIR}/${PN}-lop.patch if ! use X; then cd ${S}/make diff --git a/sci-biology/ncbi-tools/ncbi-tools-20060507.ebuild b/sci-biology/ncbi-tools/ncbi-tools-20060507.ebuild index 410e8126a5d0..91a8a67f84ed 100644 --- a/sci-biology/ncbi-tools/ncbi-tools-20060507.ebuild +++ b/sci-biology/ncbi-tools/ncbi-tools-20060507.ebuild @@ -1,6 +1,6 @@ # Copyright 1999-2006 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/ncbi-tools/ncbi-tools-20060507.ebuild,v 1.1 2006/06/26 17:24:32 ribosome Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/ncbi-tools/ncbi-tools-20060507.ebuild,v 1.2 2006/06/27 01:44:20 ribosome Exp $ inherit flag-o-matic toolchain-funcs eutils autotools @@ -41,7 +41,7 @@ src_unpack() { epatch "${FILESDIR}"/${PN}-asn2all.patch if use ppc64; then - epatch "${FILESDIR}"/${P}-lop.patch + epatch "${FILESDIR}"/${PN}-lop.patch fi if use mpi; then |