diff options
author | Justin Lecher <jlec@gentoo.org> | 2010-03-11 08:17:02 +0000 |
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committer | Justin Lecher <jlec@gentoo.org> | 2010-03-11 08:17:02 +0000 |
commit | d6e142d4a3a6f741782db75334c62d7d21454a6c (patch) | |
tree | e0cdf5ac05580066bbc1c41dad6526778819d1bb /sci-chemistry | |
parent | broken version removed (diff) | |
download | historical-d6e142d4a3a6f741782db75334c62d7d21454a6c.tar.gz historical-d6e142d4a3a6f741782db75334c62d7d21454a6c.tar.bz2 historical-d6e142d4a3a6f741782db75334c62d7d21454a6c.zip |
Python changes added
Package-Manager: portage-2.2_rc66/cvs/Linux i686
Diffstat (limited to 'sci-chemistry')
-rw-r--r-- | sci-chemistry/ccpn/ChangeLog | 8 | ||||
-rw-r--r-- | sci-chemistry/ccpn/Manifest | 10 | ||||
-rw-r--r-- | sci-chemistry/ccpn/ccpn-2.1.3.1_p100311.ebuild | 181 |
3 files changed, 194 insertions, 5 deletions
diff --git a/sci-chemistry/ccpn/ChangeLog b/sci-chemistry/ccpn/ChangeLog index 9bcfd908d784..0cdbc0b2275c 100644 --- a/sci-chemistry/ccpn/ChangeLog +++ b/sci-chemistry/ccpn/ChangeLog @@ -1,6 +1,12 @@ # ChangeLog for sci-chemistry/ccpn # Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/ccpn/ChangeLog,v 1.14 2010/03/08 21:20:40 jlec Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/ccpn/ChangeLog,v 1.15 2010/03/11 08:17:02 jlec Exp $ + +*ccpn-2.1.3.1_p100311 (11 Mar 2010) + + 11 Mar 2010; Justin Lecher (jlec) <jlec@j-schmitz.net> + +ccpn-2.1.3.1_p100311.ebuild: + Python changes added *ccpn-2.1.3.1_p100308 (08 Mar 2010) diff --git a/sci-chemistry/ccpn/Manifest b/sci-chemistry/ccpn/Manifest index 12682bebe0ac..ab650bb2d736 100644 --- a/sci-chemistry/ccpn/Manifest +++ b/sci-chemistry/ccpn/Manifest @@ -20,19 +20,21 @@ DIST ccpn-update-100226.patch.bz2 10123 RMD160 09a1fbe8cb6c75e8e9c0b005de299b676 DIST ccpn-update-100227.patch.bz2 10754 RMD160 bf822c074655c8b0e6f2cb92ebeb592cf1491a4d SHA1 fa704d5cae4aab72bdf08b6e75a576f01a368ec3 SHA256 411f131672f32cb7e0135eb2327043cebe7bf7329b107f3b0c70c0a20a45fa13 DIST ccpn-update-100303.patch.bz2 14205 RMD160 d704c5582afa4ed9e68983462944bd1177b7a59f SHA1 73993e6e94dce14c6c245ef12c53179318dbecd0 SHA256 f68ba47e09b5d14e8dbb6aec46f8789d5038f6aa4151a9b8d5fef06207be6af6 DIST ccpn-update-100308.patch.bz2 30914 RMD160 5540c49a7e362f464dcc774431234490b6d7082b SHA1 ff72c1ace15c192779c2e59e27fca6944d696429 SHA256 25d9ee427f909cad0f19233963f19494649ed9c761005175d447bc4cd5e6907c +DIST ccpn-update-100311.patch.bz2 36925 RMD160 14e56026fa309b4011276dd07eee4c1292432ded SHA1 c505d95ffbb7af15fc906a2de14c572850e4ec00 SHA256 f0c3a1c48787097463491024ce31b410b984c2fd968371244e5f66d1c37f5c31 EBUILD ccpn-2.1.2.1_p100216.ebuild 4880 RMD160 e892baef0d74df30f40e5b393c893159bd08dda5 SHA1 e1a7a09588aa2f4e341e5d94f5260072dab10474 SHA256 7777534b663f05898cf40cc1f7114b2a6de38343fe5ab31f14d4c4c4f2456c47 EBUILD ccpn-2.1.3.1.ebuild 4977 RMD160 12969caf3118f10fd0bd794f58d31be3e5c60c03 SHA1 dcdd685d5321ed97ea821fa6799e35d9b287e9dd SHA256 b55eb637a743dd0ad6c1a31b623c1c814019dcfc45f734996d3dec34a0ab5033 EBUILD ccpn-2.1.3.1_p100226-r1.ebuild 4987 RMD160 42c22f2a59502dceb18a32f5048699223bbbcc5d SHA1 f307c4c681d7118da50a08b70e34be1b300ec61a SHA256 f17620d06aa3b3d246852e6a17768feb897118199d6e1d8d47bb10617ae60ec6 EBUILD ccpn-2.1.3.1_p100227.ebuild 4984 RMD160 381de136fafe9bcfdee6b8500dd1c465b1ddde2e SHA1 a9cb9540ebe8593cfcf57ca3ff7ad22df0120cb2 SHA256 b835bee95075191931436e486f0431cec2c7b53a2503fd3477900b52a4e47763 EBUILD ccpn-2.1.3.1_p100303.ebuild 4968 RMD160 703861d3da368b696576cce61e99499f4dd9a387 SHA1 cb6780945522c5dc44930bfcefa093921e49787c SHA256 3449904be5a5e91a9b33162de7fdc62a392a612696b069ec1cb92163925ce4c6 EBUILD ccpn-2.1.3.1_p100308.ebuild 4968 RMD160 55570e8d965a301270dfbbeb525127c06a2fb13d SHA1 2e33e0da5337ff7fe2fcaf5f6c0cc0f0471714b9 SHA256 59fdc2733014cc89eaed8b3fe3692bfa1153d4697216b558c961ca6906a1f448 +EBUILD ccpn-2.1.3.1_p100311.ebuild 4968 RMD160 4c28a74b04553b04bc23bc42061f6d90e260706d SHA1 9c660041c87d58046f0e464e1eb5621903cae0c1 SHA256 ef119ae533ec22f55dd2a7cd440a47829715833b792f217ec665358580912761 EBUILD ccpn-2.1.3.ebuild 4975 RMD160 99530170d2323e58cd105a5a8e47c493d0fd765c SHA1 5c298bffe292915768357e8273a1fb3d05312fb3 SHA256 1f9701c42f9e9754f0d8dcb258e3e365ec31f4e8d99b5649376083b7ff87bbb9 -MISC ChangeLog 2582 RMD160 01f7d5503c10e2dfbac6083ad19371015e04503f SHA1 8822cac1952c1b2fab9d01405ecffcb6dcb1a1bc SHA256 6d77f119110752a0e6ff626781de76c532f3a3e95372801b9dfc174bec5eceb3 +MISC ChangeLog 2732 RMD160 ad1654d5d0b7bb576262f8694199758695522f24 SHA1 8adab319c3f6158be5258de99a988091a2d7a7c4 SHA256 85431ba57dda20dc1321490f33138ea861cc98665d30883e3b9ef5712508edc5 MISC metadata.xml 226 RMD160 0355d90bd8d1c106a19b136045ebdf970a0a2485 SHA1 1db0b2a470657641079d6613829df49a5c043ed6 SHA256 094a3ac740c81b9afbff3c855ba93cc20a593cad2392f6f4404715608a836fa1 -----BEGIN PGP SIGNATURE----- Version: GnuPG v2.0.14 (GNU/Linux) -iEYEARECAAYFAkuVajAACgkQgAnW8HDreRbyFQCfcD4C84iQETzsvebBYdvmpo/I -okAAoIQ+Q1eV/QBSuDIeI3YQ7W6c50ZB -=B+iF +iEYEARECAAYFAkuYpvMACgkQgAnW8HDreRY8BgCgmpIhk+hvMsM1YwshnN793O4r +51IAnAhOEMnrLIzg4Nh3Q5mMyaHYQqpc +=pkyc -----END PGP SIGNATURE----- diff --git a/sci-chemistry/ccpn/ccpn-2.1.3.1_p100311.ebuild b/sci-chemistry/ccpn/ccpn-2.1.3.1_p100311.ebuild new file mode 100644 index 000000000000..9978723c06b1 --- /dev/null +++ b/sci-chemistry/ccpn/ccpn-2.1.3.1_p100311.ebuild @@ -0,0 +1,181 @@ +# Copyright 1999-2010 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/ccpn/ccpn-2.1.3.1_p100311.ebuild,v 1.1 2010/03/11 08:17:02 jlec Exp $ + +EAPI="3" +PYTHON_DEPEND="2:2.5" +SUPPORT_PYTHON_ABIS="1" +PYTHON_USE_WITH="ssl tk" + +inherit eutils portability python toolchain-funcs versionator + +PATCHSET="${PV##*_p}" +MY_PN="${PN}mr" +MY_PV="$(replace_version_separator 3 _ ${PV%%_p*})" + +DESCRIPTION="The Collaborative Computing Project for NMR" +SRC_URI="http://www.bio.cam.ac.uk/ccpn/download/${MY_PN}/analysis${MY_PV}.tar.gz" + [[ -n ${PATCHSET} ]] && SRC_URI="${SRC_URI} http://dev.gentoo.org/~jlec/distfiles/ccpn-update-${PATCHSET}.patch.bz2" +HOMEPAGE="http://www.ccpn.ac.uk/ccpn" + +SLOT="0" +LICENSE="|| ( CCPN LGPL-2.1 )" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +IUSE="+opengl" + +RDEPEND=" + dev-lang/tk + dev-python/numpy + dev-tcltk/tix + opengl? ( virtual/glut )" +DEPEND="${RDEPEND}" +RESTRICT_PYTHON_ABIS="2.4 3.*" + +RESTRICT="mirror" +S="${WORKDIR}"/${MY_PN}/${MY_PN}$(get_version_component_range 1-2 ${PV}) + +src_prepare() { + [[ -n ${PATCHSET} ]] && \ + epatch "${WORKDIR}"/ccpn-update-${PATCHSET}.patch + + epatch "${FILESDIR}"/${MY_PV}-parallel.patch + epatch "${FILESDIR}"/${MY_PV}-dynamics.patch + + local tk_ver + local myconf + + tk_ver="$(best_version dev-lang/tk | cut -d- -f3 | cut -d. -f1,2)" + + if use opengl; then + GLUT_NEED_INIT="-DNEED_GLUT_INIT" + IGNORE_GL_FLAG="" + GL_FLAG="-DUSE_GL_FALSE" + GL_DIR="${EPREFIX}/usr" + GL_LIB="-lglut -lGLU -lGL" + GL_INCLUDE_FLAGS="-I\$(GL_DIR)/include" + GL_LIB_FLAGS="-L\$(GL_DIR)/$(get_libdir)" + + else + IGNORE_GL_FLAG="-DIGNORE_GL" + GL_FLAG="-DUSE_GL_FALSE" + fi + + GLUT_NOT_IN_GL="" + GLUT_FLAG="\$(GLUT_NEED_INIT) \$(GLUT_NOT_IN_GL)" + + python_copy_sources + + preparation() { + sed \ + -e "s:/usr:${EPREFIX}/usr:g" \ + -e "s:^\(CC =\).*:\1 $(tc-getCC):g" \ + -e "s:^\(OPT_FLAG =\).*:\1 ${CFLAGS}:g" \ + -e "s:^\(LINK_FLAGS =.*\):\1 ${LDFLAGS}:g" \ + -e "s:^\(IGNORE_GL_FLAG =\).*:\1 ${IGNORE_GL_FLAG}:g" \ + -e "s:^\(GL_FLAG =\).*:\1 ${GL_FLAG}:g" \ + -e "s:^\(GLUT_NEED_INIT =\).*:\1 ${GLUT_NEED_INIT}:g" \ + -e "s:^\(GLUT_NOT_IN_GL =\).*:\1:g" \ + -e "s:^\(X11_LIB_FLAGS =\).*:\1 -L${EPREFIX}/usr/$(get_libdir):g" \ + -e "s:^\(TCL_LIB_FLAGS =\).*:\1 -L${EPREFIX}/usr/$(get_libdir):g" \ + -e "s:^\(TK_LIB_FLAGS =\).*:\1 -L${EPREFIX}/usr/$(get_libdir):g" \ + -e "s:^\(PYTHON_INCLUDE_FLAGS =\).*:\1 -I\$(PYTHON_DIR)/include/python$(python_get_version):g" \ + -e "s:^\(PYTHON_LIB =\).*:\1 -lpython$(python_get_version):g" \ + -e "s:^\(GL_LIB_FLAGS =\).*:\1 -L${EPREFIX}/usr/$(get_libdir):g" \ + c/environment_default.txt > c/environment.txt + } + python_execute_function -s preparation +} + +src_compile() { + building() { + emake -C c all links + } + python_execute_function -s building +} + +src_install() { + local libdir + local tkver + + libdir=$(get_libdir) + tkver=$(best_version dev-lang/tk | cut -d- -f3 | cut -d. -f1,2) + + for wrapper in analysis dangle dataShifter eci formatConverter pipe2azara; do + sed -e "s:gentoo_sitedir:${EPREFIX}/$(python_get_sitedir -f):g" \ + -e "s:gentoolibdir:${EPREFIX}/usr/${libdir}:g" \ + -e "s:gentootk:${EPREFIX}/usr/${libdir}/tk${tkver}:g" \ + -e "s:gentootcl:${EPREFIX}/usr/${libdir}/tclk${tkver}:g" \ + -e "s:gentoopython:${EPREFIX}/usr/bin/python:g" \ + "${FILESDIR}"/${wrapper} > "${T}"/${wrapper} || die "Fail fix ${wrapper}" + dobin "${T}"/${wrapper} || die "Failed to install ${wrapper}" + done + + installation() { + local in_path + local files + + in_path=$(python_get_sitedir)/${PN} + + for i in python/memops/format/compatibility/{Converters,part2/Converters2}.py; do + sed \ + -e 's:#from __future__:from __future__:g' \ + -i ${i} + done + + insinto ${in_path} + + dodir ${in_path}/c + + ebegin "Installing main files" + doins -r data model python || die "main files installation failed" + eend + + dohtml -r doc/* || die + dosym ../../../../share/doc/${PF}/html ${in_path}/doc || die + + einfo "Adjusting permissions" + + files="ccpnmr/c/ContourFile.so + ccpnmr/c/ContourLevels.so + ccpnmr/c/ContourStyle.so + ccpnmr/c/PeakList.so + ccpnmr/c/SliceFile.so + ccpnmr/c/WinPeakList.so + ccpnmr/c/AtomCoordList.so + ccpnmr/c/AtomCoord.so + ccpnmr/c/Bacus.so + ccpnmr/c/CloudUtil.so + ccpnmr/c/DistConstraintList.so + ccpnmr/c/DistConstraint.so + ccpnmr/c/DistForce.so + ccpnmr/c/Dynamics.so + ccpnmr/c/Midge.so + ccp/c/StructAtom.so + ccp/c/StructBond.so + ccp/c/StructStructure.so + ccp/c/StructUtil.so + memops/c/BlockFile.so + memops/c/FitMethod.so + memops/c/GlHandler.so + memops/c/MemCache.so + memops/c/PdfHandler.so + memops/c/PsHandler.so + memops/c/ShapeFile.so + memops/c/StoreFile.so + memops/c/StoreHandler.so + memops/c/TkHandler.so" + + for FILE in ${files}; do + fperms 755 ${in_path}/python/${FILE} + done + } + python_execute_function -s installation +} + +pkg_postinst() { + python_mod_optimize ${PN} +} + +pkg_postrm() { + python_mod_cleanup ${PN} +} |