diff options
author | Justin Lecher <jlec@gentoo.org> | 2010-06-28 04:48:15 +0000 |
---|---|---|
committer | Justin Lecher <jlec@gentoo.org> | 2010-06-28 04:48:15 +0000 |
commit | 5d4fe23422a47739def1267496dddf0befe9c18e (patch) | |
tree | 26ea67ec0d6b81714fba0556048fbbe8bbd9a599 /sci-chemistry | |
parent | Old. (diff) | |
download | historical-5d4fe23422a47739def1267496dddf0befe9c18e.tar.gz historical-5d4fe23422a47739def1267496dddf0befe9c18e.tar.bz2 historical-5d4fe23422a47739def1267496dddf0befe9c18e.zip |
Version Bump
Package-Manager: portage-2.2_rc67/cvs/Linux x86_64
Diffstat (limited to 'sci-chemistry')
-rw-r--r-- | sci-chemistry/refmac/ChangeLog | 9 | ||||
-rw-r--r-- | sci-chemistry/refmac/Manifest | 13 | ||||
-rw-r--r-- | sci-chemistry/refmac/files/5.6.0078-allow-dynamic-linking.patch | 82 | ||||
-rw-r--r-- | sci-chemistry/refmac/refmac-5.6.0078.ebuild (renamed from sci-chemistry/refmac/refmac-5.6.0076.ebuild) | 4 |
4 files changed, 99 insertions, 9 deletions
diff --git a/sci-chemistry/refmac/ChangeLog b/sci-chemistry/refmac/ChangeLog index 5a3284c1bff4..fb31944790a7 100644 --- a/sci-chemistry/refmac/ChangeLog +++ b/sci-chemistry/refmac/ChangeLog @@ -1,6 +1,13 @@ # ChangeLog for sci-chemistry/refmac # Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/refmac/ChangeLog,v 1.10 2010/06/16 14:27:33 jlec Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/refmac/ChangeLog,v 1.11 2010/06/28 04:48:15 jlec Exp $ + +*refmac-5.6.0078 (28 Jun 2010) + + 28 Jun 2010; Justin Lecher <jlec@gentoo.org> + +files/5.6.0078-allow-dynamic-linking.patch, -refmac-5.6.0076.ebuild, + +refmac-5.6.0078.ebuild: + Version Bump 16 Jun 2010; Justin Lecher <jlec@gentoo.org> refmac-5.5.0109.ebuild, refmac-5.5.0110.ebuild, refmac-5.5.0110-r1.ebuild, refmac-5.6.0076.ebuild, diff --git a/sci-chemistry/refmac/Manifest b/sci-chemistry/refmac/Manifest index 9d5a12a1e14b..85949b83186f 100644 --- a/sci-chemistry/refmac/Manifest +++ b/sci-chemistry/refmac/Manifest @@ -5,22 +5,23 @@ AUX 5.5-allow-dynamic-linking.patch 2025 RMD160 b4324061b5468aedce6d37fc17049711 AUX 5.5-test.log.patch 1146 RMD160 0ea6293e8ecde3b9ae12658a523e3c30a5c9f01b SHA1 d026fdea6a487754f7e48ec24bcf4851a613b6d1 SHA256 d2c2a09f44e525dc255bc2ac93ca4194b24ca1fe58c31f0e3b5c32e439dfe2e7 AUX 5.5.0110-allow-dynamic-linking.patch 2265 RMD160 191b90c619a3a0a6cd71b819b4517d639f9912e0 SHA1 23df6c19a6fa9a41ed19d4ec36bd3130ffdb40b7 SHA256 ed10babfa6f9521b1b8e0dd574aa5fa4207d64bcd57332e97f0b35039b66942b AUX 5.6.0075-allow-dynamic-linking.patch 1447 RMD160 5b4eca9f5e03aa0dea24fe4e391c363b3600eb4a SHA1 a3e4989d6b68c77e69e1bfcb76ddbc98c6e7a157 SHA256 0e54d70ac56326422158d19268432772813d34b653b041554ac6e08981ff0140 -DIST refmac5.6_source_v5.6.0076.tar.gz 1281294 RMD160 f177c6b8589028e85ee0855a1f9977d3296f18c5 SHA1 e070bbc629614f208a45f49f29762b077dfcd750 SHA256 bb5bb247a1603c4c97b4a2efa6e62ca13d03acedaac19ba975c24bed17363d2f +AUX 5.6.0078-allow-dynamic-linking.patch 3254 RMD160 0136fa28503c10c07ae3e7b653c04cd1e03e3641 SHA1 8b896a003dad2ab840bd7310871fab8191930de6 SHA256 ad4c0feaefcdac5b834549f99ae69aa0b0b33c37332e7e385ee04258b4c51326 DIST refmac5.6_source_v5.6.0077.tar.gz 1281296 RMD160 3af10c692dcca23bce735b6b45c129c4a1c029e6 SHA1 881d3e456436e15073be495a340504770884e06f SHA256 9f5df52e5b42d5c4e83388f9acd900461c66b76b25248fb539432d4dacb38d50 +DIST refmac5.6_source_v5.6.0078.tar.gz 1285576 RMD160 9d5a56a6ae5f5cd03b081607a9916ba543d258a1 SHA1 cc5543cddfbd9f4dfb9105c6472f091cffca7e38 SHA256 a23d657098d890c2ce2c20de35865f512b841c1357611ae3aca31897df1ab832 DIST refmac_5.5.0109.tar.gz 1326779 RMD160 3b603c13638407cceb907bd43ac0a971b587c116 SHA1 3cc35a55df71bac4de3eec9cf0e690e221ae3c86 SHA256 38d416c94e1f86a0676d48d7ddaeb4af272970b8cd6b084e70aa38481327c59e DIST refmac_5.5.0110.tar.gz 1326832 RMD160 6613ca8b70e54e7827f8ff02b7d497560cb83e39 SHA1 ba2e38db6c88550bd901b474de881d6514b4d74e SHA256 1353fb1042586ec8fa37d0a90f274890d0ccc02377af5216200662338dfe08ca DIST test-framework.tar.gz 130933173 RMD160 7122539dc713615dca2ddaddfd8d152cd22624d0 SHA1 1d3e3019a67afb9b2346e919c859d402d3250fea SHA256 df050a2a29da80518cb0616a0bbeb82298ea0721549348d15353bf0f66240605 EBUILD refmac-5.5.0109.ebuild 1760 RMD160 7d38ec3480c3716698a1926815414c02dae4fe32 SHA1 b4d08deabb66f10f2a40f289249c568b8002c536 SHA256 8a790eeb7b8510d5f2780470a900f7618368dc48c45d1e2599cbf6bf8cc64fd8 EBUILD refmac-5.5.0110-r1.ebuild 1787 RMD160 9017aa6e2f7d9d764904eeeb624c448025583701 SHA1 9252ba8e478ec48e5bba99678c8dde60f4d4ac2f SHA256 bdf76b64a98146b57cd6037473206041a181f893f19b6d0275b950d7560aa1a6 EBUILD refmac-5.5.0110.ebuild 1805 RMD160 80e546666e72290365c99c542abcef90a3394bb8 SHA1 a1731838742679b66984018fb8d25b8dbb11ae29 SHA256 8f825fc7f75854d631d6c6b037398237b8231a9fdc162e9ab1c6a46490b0a957 -EBUILD refmac-5.6.0076.ebuild 1789 RMD160 cc8250adc360873f3dc6a120d7523bdbdd609a15 SHA1 e26b234040c3b0450190abd4b1785af7f34cb644 SHA256 5362d237d3f25b7a5d20788cc91dce8d17077435308c7ae02122b4c86106149a EBUILD refmac-5.6.0077.ebuild 1789 RMD160 e5433f715ae0693c4ccbf65cb44f64b988199ea2 SHA1 dfaa458bfa184ffc2118bcc13e0a3b30caa472e8 SHA256 f23cc970ed7fc6766fddd8ceef788c58fd254bbe2be53f9df14561a06c13b1be -MISC ChangeLog 1804 RMD160 643c49ed3f8eba766807d1b4e241d456f46b6267 SHA1 2e90b7b2e2ac9e8c9375072a03e9067c514a22c5 SHA256 a6a10daf54cd4e8ad3777f3f9cc78f43922821f6b790114219047b5b8e9380f9 +EBUILD refmac-5.6.0078.ebuild 1786 RMD160 3a75889780b1118f2481991a56b95e62ab8363c4 SHA1 537ab12d16126fff356781f66b1d3aa2edb49117 SHA256 e43fce8f9a0fd05c6a02edb534c09a31017b2bf9274886ee0755993078e23520 +MISC ChangeLog 1998 RMD160 2d9b0c61b3e74be0b70948300fe431c95d267b21 SHA1 6105a58fec314da6f27473a7f878635f87442b78 SHA256 4c0f5b30919df734d10b9056e10507769f8967366d0433c570065479224ed4ec MISC metadata.xml 311 RMD160 df83b13d491a71b729455b664088d89ddbde1c8c SHA1 fffd2a5645181aa12ac9b6f74da9a011cdcf1b97 SHA256 782521c7e16d7eec82d7b7e7c43102806e7f72bc7366401808b1e1ac6e26045a -----BEGIN PGP SIGNATURE----- Version: GnuPG v2.0.15 (GNU/Linux) -iEYEARECAAYFAkwY31sACgkQgAnW8HDreRazLgCgz3picbrWVEebmWnfLgGBqcYQ -cqEAoJbe08r3EdTDbKnd9Gb1ocoQmTvS -=5uLi +iEYEARECAAYFAkwoKZUACgkQgAnW8HDreRY0tACeOKtybHpc+gJmsKXD2x8IId20 +194An2QS8xCEkCqlOtKjeLU6ps8IoGAd +=i7zU -----END PGP SIGNATURE----- diff --git a/sci-chemistry/refmac/files/5.6.0078-allow-dynamic-linking.patch b/sci-chemistry/refmac/files/5.6.0078-allow-dynamic-linking.patch new file mode 100644 index 000000000000..b1d74de4bbb5 --- /dev/null +++ b/sci-chemistry/refmac/files/5.6.0078-allow-dynamic-linking.patch @@ -0,0 +1,82 @@ +diff --git a/makefile_refmac.inc1 b/makefile_refmac.inc1 +index 3f858c8..8b32cab 100644 +--- a/makefile_refmac.inc1 ++++ b/makefile_refmac.inc1 +@@ -89,9 +89,7 @@ messy_pdb.o \ + bridge.o \ + i0.o \ + i1.o \ +-chbevl.o \ +-$(LLIBCIF) \ +-$(LLIBLAPACK) ++chbevl.o + + + SUBL = \ +@@ -124,9 +122,7 @@ cell_symm_subrs.o \ + iheap_sort.o \ + linalgebra.o \ + math_refmac.o \ +-subnumrec.o \ +-$(LLIBLAPACK) \ +-$(LLIBCCP) ++subnumrec.o + + #-------------------------------------------------------------------------------- + +@@ -150,7 +146,7 @@ twin77mod.o: twin77mod.f + $(FC) $(FFLAGS) -c twin77mod.f + + +-optimise_solvent_all.o: optimise_solvent_all.f90 ++optimise_solvent_all.o: optimise_solvent_all.f90 atomf77mod.o + $(FC) $(FFLAGS) -c optimise_solvent_all.f90 + + ncs_rest.o: ncs_ncs_generate.f90 ncs_rest.f +@@ -178,7 +174,7 @@ align_refmac.o: align_refmac.f90 + $(FC) $(FFLAGS) -c align_refmac.f90 + + +-hkon_secder_tch.o: hkon_secder_tch.f local_tls.f90 ncs_simil.f90 optimise_solvent_all.f90 ++hkon_secder_tch.o: hkon_secder_tch.f local_tls.f90 ncs_simil.f90 optimise_solvent_all.f90 optimise_solvent_all.o + $(FC) $(FFLAGS) -c optimise_solvent_all.f90 ncs_simil.f90 local_tls.f90 hkon_secder_tch.f + + oppro_allocate.o: oppro_allocate.f filter_params.f90 optimise_solvent_all.f90 +@@ -220,8 +216,8 @@ refall_twin.o: refall_twin.f optimise_solvent_all.f90 + rharvest.o: rharvest.f optimise_solvent_all.f90 + $(FC) $(FFLAGS) -c optimise_solvent_all.f90 rharvest.f + +-solvent_contr_mask.o: solvent_contr_mask.f optimise_solvent_all.f90 +- $(FC) $(FFLAGS) -c optimise_solvent_all.f90 solvent_contr_mask.f ++solvent_contr_mask.o: solvent_contr_mask.f optimise_solvent_all.f90 atomf77mod.o ++ $(FC) $(FFLAGS) -c atomf77mod.f optimise_solvent_all.f90 solvent_contr_mask.f + + subag_scale_hessian.o: subag_scale_hessian.f optimise_solvent_all.f90 + $(FC) $(FFLAGS) -c optimise_solvent_all.f90 subag_scale_hessian.f +@@ -229,7 +225,7 @@ subag_scale_hessian.o: subag_scale_hessian.f optimise_solvent_all.f90 + subcf_scale1.o: subcf_scale1.f optimise_solvent_all.f90 + $(FC) $(FFLAGS) -c optimise_solvent_all.f90 subcf_scale1.f + +-refmac_xml.o: refmac_xml.f optimise_solvent_all.f90 ++refmac_xml.o: refmac_xml.f optimise_solvent_all.f90 optimise_solvent_all.o + $(FC) $(FFLAGS) -c optimise_solvent_all.f90 refmac_xml.f + + hkl_pack.o: hkl_pack.f90 +@@ -239,7 +235,7 @@ subvag.o: subvag.f hkl_pack.f90 + $(FC) $(FFLAGS) -c hkl_pack.f90 subvag.f + + refmac: $(SUBR) +- $(FC) $(FFLAGS) -o refmac${VERSION} ${SUBR} $(LLIBOTHERS) $(LLIBCCP) ++ $(FC) $(FFLAGS) $(LDFLAGS) -o refmac${VERSION} ${SUBR} $(LLIBOTHERS) $(LLIBCCP) $(LLIBCIF) $(LLIBLAPACK) + + mol2_file.o: mol2_file.f odb_files.f90 + $(FC) $(FFLAGS) -c odb_files.f90 mol2_file.f +@@ -260,7 +256,7 @@ libcheck.o: libcheck.f elements_module.f90 pdb2libcheck.f90 + $(FC) $(FFLAGS) -c elements_module.f90 pdb2libcheck.f90 libcheck.f + + libcheck: $(SUBL) +- $(FC) $(FFLAGS) -o libcheck${VERSION} $(SUBL) ++ $(FC) $(FFLAGS) $(LDFLAGS) -o libcheck${VERSION} $(SUBL) $(LLIBCCP) $(LLIBCIF) $(LLIBLAPACK) + + clean: + /bin/rm *.o diff --git a/sci-chemistry/refmac/refmac-5.6.0076.ebuild b/sci-chemistry/refmac/refmac-5.6.0078.ebuild index 05e673f0a506..057fbe9d5c91 100644 --- a/sci-chemistry/refmac/refmac-5.6.0076.ebuild +++ b/sci-chemistry/refmac/refmac-5.6.0078.ebuild @@ -1,6 +1,6 @@ # Copyright 1999-2010 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/refmac/refmac-5.6.0076.ebuild,v 1.2 2010/06/16 14:27:32 jlec Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/refmac/refmac-5.6.0078.ebuild,v 1.1 2010/06/28 04:48:15 jlec Exp $ EAPI="2" @@ -29,7 +29,7 @@ DEPEND="${RDEPEND}" S="${WORKDIR}" PATCHES=( - "${FILESDIR}"/5.6.0075-allow-dynamic-linking.patch + "${FILESDIR}"/${PV}-allow-dynamic-linking.patch ) src_prepare() { |