Version bump. Fixes #271998, #342743 and #345095. Thanks to urcindalo and Diego Elio Pettenò for the reports. Thanks to Argon <argonovsky@gmail.com> for his work on new ebuild

Package-Manager: portage-2.1.9.24/cvs/Linux x86_64

4 files changed, 125 insertions, 16 deletions

diff --git a/sci-chemistry/gchemutils/ChangeLog b/sci-chemistry/gchemutils/ChangeLog
index 5da2c17e002d..ed7bbcdd1433 100644
--- a/sci-chemistry/gchemutils/ChangeLog
+++ b/sci-chemistry/gchemutils/ChangeLog
@@ -1,6 +1,14 @@
 # ChangeLog for sci-chemistry/gchemutils
 # Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/gchemutils/ChangeLog,v 1.12 2010/05/16 02:59:01 je_fro Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/gchemutils/ChangeLog,v 1.13 2010/11/25 13:05:07 xarthisius Exp $
+
+*gchemutils-0.13.1 (25 Nov 2010)
+
+  25 Nov 2010; Kacper Kowalik <xarthisius@gentoo.org>
+  +gchemutils-0.13.1.ebuild:
+  Version bump. Fixes #271998, #342743 and #345095. Thanks to urcindalo and
+  Diego Elio Pettenò for the reports. Thanks to Argon <argonovsky@gmail.com>
+  for his work on version bump.
 
   16 May 2010; Jeff Gardner <je_fro@gentoo.org> gchemutils-0.10.12.ebuild:
   Removing gnome USE flag from libgsf and goffice.
diff --git a/sci-chemistry/gchemutils/Manifest b/sci-chemistry/gchemutils/Manifest
index 515cc731e14d..d9576ebebad6 100644
--- a/sci-chemistry/gchemutils/Manifest
+++ b/sci-chemistry/gchemutils/Manifest
@@ -1,5 +1,19 @@
+-----BEGIN PGP SIGNED MESSAGE-----
+Hash: SHA1
+
 AUX gchemutils-0.10.3-glibc-2.10.patch 1583 RMD160 0306a058cc3604a330e19e0b05960d5c619ed9a0 SHA1 735f9db751906881e55da9ea0acd7ce20ce4620a SHA256 a9dd891c37df5545c10a08a40ed39cc44c776e4942767758157279d7235b1123
 DIST gnome-chemistry-utils-0.10.12.tar.bz2 4228290 RMD160 381deb76757e1bfa686da6429032c9fa9773ffbd SHA1 a32a536c9bb8653801a58f12ae605f3b12222e4b SHA256 43cb2816b3fe175e017b00244a331bf5b98e286a71de692d65d333502ad90e92
+DIST gnome-chemistry-utils-0.13.1.tar.bz2 5024796 RMD160 a27fb614a0113365a9ee11f5e8bbf7d5cb97a445 SHA1 e7b260345c0f3b898c662077060b27689837ee42 SHA256 f8760ba4fe0d58a52a0fc790b52b4d7bd4628247afd6018481022c43a6e040c7
 EBUILD gchemutils-0.10.12.ebuild 1353 RMD160 50438027731f2ea8f64c9cec28592dee1cff9ec4 SHA1 557c2b3148df1b07c6b11382e7caf21f38544c51 SHA256 33ecb738cc2616bf6c66a0d01ed4bdc20e26dea66e1decfe241e0c859c8c1d5d
-MISC ChangeLog 2262 RMD160 a3ac557c1a754c2191066629ff9eb35c50a2bab6 SHA1 c189d38d9bd521ffe99e5d1690a1b0f30cf390e5 SHA256 86f838a056f6142b6ce6a84f3e7ea329ef357e744322913fa033010643d31eef
+EBUILD gchemutils-0.13.1.ebuild 1796 RMD160 b4ec41b5b6b086ac956932f18ecf1571b6c8628a SHA1 2bbe90dc7d81b3bef4862e1cf20e827f139bc582 SHA256 af224110d401968484134a78b744155460fe76db80d87aa9e20e7051ae0526b5
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 MISC metadata.xml 363 RMD160 e9bfd61261c21ae3c66702671fed61a49c45f031 SHA1 079138faa975ff2e6475f1b315fdba1ccb9d4faa SHA256 42666fb16d5d69c9e7864c2074465d53389650fece462548b0dfa8a392e12908
+-----BEGIN PGP SIGNATURE-----
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diff --git a/sci-chemistry/gchemutils/gchemutils-0.13.1.ebuild b/sci-chemistry/gchemutils/gchemutils-0.13.1.ebuild
new file mode 100644
index 000000000000..7a1ebda8ea11
--- /dev/null
+++ b/sci-chemistry/gchemutils/gchemutils-0.13.1.ebuild
@@ -0,0 +1,72 @@
+# Copyright 1999-2010 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/gchemutils/gchemutils-0.13.1.ebuild,v 1.1 2010/11/25 13:05:07 xarthisius Exp $
+
+EAPI=3
+
+inherit gnome2 multilib versionator
+
+MPV=$(get_version_component_range 1-2)
+MY_PN=gnome-chemistry-utils
+MY_P=${MY_PN}-${PV}
+
+DESCRIPTION="C++ classes and Gtk+-2 widgets related to chemistry"
+HOMEPAGE="http://www.nongnu.org/gchemutils/"
+SRC_URI="http://download.savannah.gnu.org/releases/${PN}/${MPV}/${MY_P}.tar.bz2"
+
+LICENSE="GPL-2"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE="nls nsplugin"
+
+CDEPEND="gnome-base/libglade
+	x11-libs/goffice
+	x11-libs/gtkglext
+	sci-chemistry/chemical-mime-data
+	sci-chemistry/bodr
+	sci-chemistry/openbabel
+	nsplugin? ( || (
+		net-libs/xulrunner
+		www-client/firefox
+	) )"
+RDEPEND="${CDEPEND}
+	gnome-extra/yelp" #271998
+DEPEND="${CDEPEND}
+	app-text/gnome-doc-utils
+	dev-util/pkgconfig
+	nls? ( sys-devel/gettext )"
+
+S=${WORKDIR}/${MY_P}
+
+pkg_setup() {
+	G2CONF="${G2CONF}
+		--disable-schemas-install
+		--disable-scrollkeeper
+		--disable-dependency-tracking
+		--disable-update-databases
+		$(use_enable nsplugin mozilla-plugin)
+		$(use_enable nls)"
+
+	if use nsplugin; then
+		G2CONF="${G2CONF} --with-mozilla-libdir=/usr/$(get_libdir)/nsbrowser/"
+	fi
+
+	DOCS="AUTHORS ChangeLog README TODO NEWS"
+}
+
+src_test() {
+	# There are no tests, and make check needlessly rebuilds docs needing extra
+	# app-text/docbook-xml-dtd-{4.1.2,4.5} wtr bug 342743
+	true
+}
+
+src_install() {
+	gnome2_src_install
+	find "${D}" -name "*.la" -delete
+}
+
+pkg_postinst() {
+	gnome2_pkg_postinst
+	elog "You can safely ignore any 'Unknown media type in type blah' warnings above."
+	elog "For more info see http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=420795 "
+}
diff --git a/sci-chemistry/gromacs/Manifest b/sci-chemistry/gromacs/Manifest
index ed3793892cfc..1871bb4adacd 100644
--- a/sci-chemistry/gromacs/Manifest
+++ b/sci-chemistry/gromacs/Manifest
@@ -1,20 +1,35 @@
-AUX gromacs-4.0.4-configure-gfortran.patch 731 RMD160 1ccea4fafd6837461114fc36bc31db4f9390fc08 SHA1 0ec79e9ab691cbae5f116adaa3245ef0b123a598 SHA256 5b902eac127bc84e188224fbfe0182ab3fa3b03c200325ada9cd628bb913b479
-AUX gromacs-4.0.4-sparc-cyclecounter.patch 492 RMD160 0edd643a6dc11820e9785561f03047795044311f SHA1 66c0339c308b3d661def0e184311be510e804c3b SHA256 01565b45b73b32d8d6f83bf1fdf750de4215b24935d992c81191a52d01eb6bed
-AUX gromacs-4.0.9999-ccache.patch 678 RMD160 043d0e207e04a275fe00a3bd2b28f8dc0dfd4b7f SHA1 08bc5ac8bc0b28f68e1ede994d49616dd920af5d SHA256 ca477d54351c418f1d39dda29373a1426c9403ec0d2f21c28fc7568227d47632
-AUX gromacs-4.0.9999-configure-gfortran.patch 760 RMD160 1700579b0c2dfb8cbb743d795aa9f0f9f467c06b SHA1 e6924d3598b20195fcb6809e64f333def5b0f919 SHA256 1a59dfde8a3db8db729bd19691a5945e02be2725fa66ec0b125ab3b931518761
+-----BEGIN PGP SIGNED MESSAGE-----
+Hash: SHA256
+
 AUX gromacs-4.0.9999-docdir.patch 1352 RMD160 336ab23b4b65430caf3205650a8787e8e33d2137 SHA1 77e0cc966c4d755f603b2d0ab9a075c0ee6b7361 SHA256 8ead457b06f7f943455a95494be4648e539934699d29e955d2e05ac02f1ca4ef
 DIST ffamber_v4.0-doc.tar.gz 7915520 RMD160 aeadb18bd88bcd9e6fc45af22af15c51e32c66a3 SHA1 8d4969fa7eec660b41f769874be9698980b49ed0 SHA256 0b3395570dfe9bf808a297fcb120e1f525f38a91791fbafe6e444d542d7754aa
 DIST gmxtest-4.0.4.tgz 14845017 RMD160 c7c583415438bdef4c9996da9064254e9460cf16 SHA1 998179aa2bfbc4f80514f10ed774762f85c854c3 SHA256 6a7f787f4bb7cbecb688115ff0854a5ffd2ef33487d7bce4b031e63848b6f361
-DIST gromacs-4.0.4.tar.gz 8443779 RMD160 f90327814170c26a43d99fe7587357a46989fdec SHA1 9466f3ab95d60c0aba8916b1fcc70129cb4e4d72 SHA256 8aefd03cd3269e85c84427f05ceea6d3e16874cd4a90bf3f6fec2b2be24c426f
-DIST gromacs-4.0.5.tar.gz 8465397 RMD160 4c2344629307f3a3daa11b986153d65883a44783 SHA1 9969aae6f77e2216add22a7b29805c4de8df649f SHA256 436b7a2a1ba3637eb07e30d676d78962008373a28fd17a3d889fa5816ca30339
 DIST gromacs-4.0.7.tar.gz 8404518 RMD160 4fa8e5c90f549ef627a98a907a166676692a4c4b SHA1 8519bef2fa989fb487d54612b0a2d0228f228b30 SHA256 048f8ece2829f01d99f7e04e1d6e8f88d3a32273192274f2e9fcf71f41f212c1
+DIST gromacs-4.0.7_missing_distfiles.patch.bz2 5696 RMD160 b49b6e99e00cfcc1cda3a7f28c3a508d7e2c482d SHA1 8812d13e746d35d2b2b2d1e2224ffd6b60973bc2 SHA256 a648c9da000f44749eb6964c668523059125aab29946a08a6b2d22a90637363c
 DIST gromacs-4.0.7_upstream2010-06-08.patch.gz 11876 RMD160 d65c9cf0386319953113ac1a5dc548768a745345 SHA1 823a72c4126d789ae38921bd46743414d4f391c1 SHA256 91d3eee79a0ec20df506e59bab789fe15428b4323548af5f97ccbae506036879
-DIST gromacs-4.5.1.tar.gz 10304547 RMD160 116ca5bc4644d1460086cfb2097961abd11db63b SHA1 cbe52c3ec613fe8b652cd24b86c4fdf31b58c71b SHA256 768a02ee995f950b442dc131c25c1b946f1907d2286fd3fa3eb7fa967ed8efb0
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-DIST manual-4.0.pdf 2135100 RMD160 b963642f8e1433f11328c3d0c4b1645c9de506da SHA1 8ae951ee15b2a7dc626331fce36511bc8766144c SHA256 646f810477eee2d710de6019c52056550413d0ba77baf9680195c835ddafe80a
-EBUILD gromacs-4.0.4.ebuild 6918 RMD160 d31ffadfe240147555b227c36456d81c35f5f5dc SHA1 52b59952c4fb4861ed6bbe2f48ba4c3443b07cd4 SHA256 078f3942a1b5bf671326be97dacb22f37783c082c154bf193e28e18c4e314d3e
-EBUILD gromacs-4.0.5.ebuild 6762 RMD160 c9945b966f14d1aa3fab96928a8c1269f2d0b4fb SHA1 535119ceb458903fd294f21959df4338eafd475d SHA256 dc76914d616ac4f750e9073601f1fc9cd30ab6f7b15a01152b95ef625a755c3b
-EBUILD gromacs-4.0.7-r4.ebuild 10001 RMD160 ed610d1c502d424549ffe3eac35e6c53f526d8fa SHA1 0e8fb79624c682fb6eccd26c37e972c1e57b5590 SHA256 5828e2cb1db8425e528acb961af0aa1ca88befcc3c6b49778ea042d1fac8f152
-EBUILD gromacs-4.5.1.ebuild 7575 RMD160 686727c7c26b20a2068417b0dbe284b2bf771e7f SHA1 582f88829a46789b41738876a0874ad63fd8a343 SHA256 ba6dab49699bc8ee494c9f26b517cc9aa45a70916a2a46f38a93eb57ac8c95e9
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+DIST gromacs-manual-4.5.3.pdf 2438528 RMD160 07f5ec0db1a773e77806c79554e5bb4fa8533dfd SHA1 7c81fc18e426d1090c485968d81957977ff10fc9 SHA256 6794fca3a2125918a03cd6bae3c031ab9b213c42a5f68a720c955b9107508717
+EBUILD gromacs-4.0.7-r4.ebuild 10024 RMD160 1c4727686660eee8d8094f7cbdeaeca84e11fbc7 SHA1 010c544894e7f546d3811ac23ea3ea832c5a70d6 SHA256 d21ffa7b5a7125ed42676f5b3819ff0257c101b653d36710d3275ae82ac58661
+EBUILD gromacs-4.0.7-r5.ebuild 9753 RMD160 05606f8caab1096cffb583e20293cdf2317aee1c SHA1 690ccdefe2eea0d2a9971bb8186298ffbdcc3bbb SHA256 b633cec3d6ed708af1039c5dc1233af3cd7f5b8dc6c61b83c2ec06ddb8a3fb95
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