Extract lots of information from Protein Data Bank files.

Package-Manager: portage-2.1_pre1

1 files changed, 50 insertions, 0 deletions

diff --git a/sci-chemistry/pdb-extract/pdb-extract-1.700.ebuild b/sci-chemistry/pdb-extract/pdb-extract-1.700.ebuild
new file mode 100644
index 000000000000..8f771eb92c98
--- /dev/null
+++ b/sci-chemistry/pdb-extract/pdb-extract-1.700.ebuild
@@ -0,0 +1,50 @@
+# Copyright 1999-2005 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pdb-extract/pdb-extract-1.700.ebuild,v 1.1 2005/12/20 04:11:02 spyderous Exp $
+
+inherit eutils toolchain-funcs multilib
+
+MY_P="${PN}-v${PV}-prod-src"
+DESCRIPTION="Tools for extracting mmCIF data from structure determination applications"
+HOMEPAGE="http://sw-tools.pdb.org/apps/PDB_EXTRACT/index.html"
+SRC_URI="http://sw-tools.pdb.org/apps/PDB_EXTRACT/${MY_P}.tar.gz"
+LICENSE="PDB"
+SLOT="0"
+KEYWORDS="~x86"
+IUSE=""
+RDEPEND=""
+DEPEND="${RDEPEND}
+	sci-libs/cifparse-obj"
+PDEPEND="sci-libs/rcsb-data"
+S="${WORKDIR}/${MY_P}"
+
+src_unpack() {
+	unpack ${A}
+	epatch ${FILESDIR}/respect-cflags-and-fix-install.patch
+	cd ${S}
+
+	# Get rid of unneeded directories, to make sure we use system files
+	ebegin "Deleting redundant directories"
+	rm -rf btree-obj* ciflib-common* cifobj-common* cif-table-obj* maxit* \
+		misclib* regex* validation*
+	eend
+
+	sed -i \
+		-e "s:^\(CCC=\).*:\1$(tc-getCXX):g" \
+		-e "s:^\(GINCLUDE=\).*:\1-I${ROOT}usr/include/rcsb:g" \
+		-e "s:^\(LIBDIR=\).*:\1${ROOT}usr/$(get_libdir):g" \
+		${S}/etc/make.*
+}
+
+src_compile() {
+	emake || die "make failed"
+}
+
+src_install() {
+	exeinto /usr/bin
+	doexe bin/*
+	dolib.a lib/*
+	insinto /usr/include/rcsb
+	doins include/*
+	dodoc README-source README
+}