Todays python stuff

Package-Manager: portage-2.2.0_alpha30/cvs/Linux x86_64

4 files changed, 442 insertions, 5 deletions

diff --git a/sci-chemistry/ccpn/ChangeLog b/sci-chemistry/ccpn/ChangeLog
index 5d2def31b578..56c7202eb896 100644
--- a/sci-chemistry/ccpn/ChangeLog
+++ b/sci-chemistry/ccpn/ChangeLog
@@ -1,6 +1,13 @@
 # ChangeLog for sci-chemistry/ccpn
 # Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/ccpn/ChangeLog,v 1.60 2011/04/01 10:35:38 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/ccpn/ChangeLog,v 1.61 2011/05/05 10:57:00 jlec Exp $
+
+*ccpn-2.2.1_p110505 (05 May 2011)
+*ccpn-2.1.5_p110505 (05 May 2011)
+
+  05 May 2011; Justin Lecher <jlec@gentoo.org> +ccpn-2.1.5_p110505.ebuild,
+  +ccpn-2.2.1_p110505.ebuild:
+  Todays python stuff
 
 *ccpn-2.2.1_p110401 (01 Apr 2011)
 *ccpn-2.1.5_p110401 (01 Apr 2011)
diff --git a/sci-chemistry/ccpn/Manifest b/sci-chemistry/ccpn/Manifest
index 42a481ea7660..ab420f30f132 100644
--- a/sci-chemistry/ccpn/Manifest
+++ b/sci-chemistry/ccpn/Manifest
@@ -25,10 +25,12 @@ DIST ccpn-update-2.1.5-110222.patch.bz2 64519 RMD160 726a0b719d33d3847a4d89d5ffd
 DIST ccpn-update-2.1.5-110226.patch.bz2 64972 RMD160 d5c6934a68c2a02d042c67329a021bbb3bcb97c3 SHA1 9fcf7c1d7053fad9e61769b16c5415c20a56bef0 SHA256 70ebf213b699d1fe4303fcf6c60332863cec02c1284684cdafb502d4af5de79f
 DIST ccpn-update-2.1.5-110308.patch.bz2 67868 RMD160 7b8aeb929a1f77317d9eb60a7ca830857baac826 SHA1 6ddf0f94086e5fbc26be338002bc98f3944090e3 SHA256 9f70b1ee0bdf302df3f3c91776dc549af0a8a7c7e3088b6e79b9659c16703cfc
 DIST ccpn-update-2.1.5-110401.patch.bz2 75380 RMD160 20acef6c31a9e2252a6dcec23f965ae7d498f6b3 SHA1 084b4270142b04c02478e742e2e312c4410ecf13 SHA256 896fc00dfbe97d5ce1bbeac91a2221a79d8d112eac208202cede1a5396286ae7
+DIST ccpn-update-2.1.5-110505.patch.bz2 78824 RMD160 0deb492900e4fd1dab18f44924ea4ab242251cd3 SHA1 c5d8a59df36f73125a27dc25fcb09e36fcb1990d SHA256 cc63f88d0676258c931909a7e6055c110e661e12e0ce9f8040402a25d76e9319
 DIST ccpn-update-2.2.1-110222.patch.bz2 2346 RMD160 89ebe4954b56b25e59f81a7243af088068323f11 SHA1 4b94bf6fa2d1bd1dd0d4bdd2fae4a6caf64b0d1d SHA256 7dd92ee0350beaefddbcbd62420aa5b3699f0797f31a4d47799d2669d8499b7a
 DIST ccpn-update-2.2.1-110226.patch.bz2 3836 RMD160 95d07934ae6ec7d434c1cacd01858ab606ff8ccb SHA1 eb8a735785206472b5681fdbdb700d3126a6ec9c SHA256 a7576d8e3af8083f324bafa85b598616559307725a00780380de6f5909ea6b4d
 DIST ccpn-update-2.2.1-110308.patch.bz2 8112 RMD160 6985dd15b0a705b787ddc5d06c16a66575e4dee1 SHA1 c7726a10cfdd94574d1cbc55ea68d63148336251 SHA256 223a40975ccccafffdf08167b3eb5885a826402092fc5d8e23723f01f5b34e48
 DIST ccpn-update-2.2.1-110401.patch.bz2 20666 RMD160 193d7f86ab75d2a862953683ec503bed947f3468 SHA1 cfab70216cd485a68234c06808abcdf51b917d98 SHA256 15468c3e1412d9d2c97ef52bcaac255d65d79dd3016d0ae3adb48f7f3d0dc46f
+DIST ccpn-update-2.2.1-110505.patch.bz2 44951 RMD160 dd4a3cd1be1dd3155f1ade758e8775cbb7d3904b SHA1 0ce1ecf46736ace3a073e1154ed2f7280d502aee SHA256 f661602210e9bc4a7d45df78cfce6893962ce53c4f30a92439344c533f72be95
 EBUILD ccpn-2.1.3.1_p100806.ebuild 5190 RMD160 c1dd4e2443ab5cf8386627a9feba25be6e61b715 SHA1 0d9700191a04c6ed5f106e2712b010d499315827 SHA256 ed26ef362193f91d4726fd49a1c4b19c1f975c3847b0616ada2e64ce7a90ffa5
 EBUILD ccpn-2.1.5_p110202.ebuild 5770 RMD160 98c49d481a5a0e28d2f62b303950bab3467c3246 SHA1 2fb5b0d792b4dcfac20f4d11d405104ab5f81129 SHA256 77d1d7239204ffa4247501133996478e13f07b863fdfebe5d4b056089f9e08ba
 EBUILD ccpn-2.1.5_p110217.ebuild 5794 RMD160 acbb36a1c2f01d9d6944b421b20f5c6ed8a2766e SHA1 268ced5e44ed04339e96242560c06d84ebb3031e SHA256 b6b776e2972389b0e2cbd8054c4a52bb50a5310e5c99364bd7b4ae0cd32c3872
@@ -36,16 +38,18 @@ EBUILD ccpn-2.1.5_p110222.ebuild 5794 RMD160 3a528e62388cd87f6911d00049687f4ad8a
 EBUILD ccpn-2.1.5_p110226.ebuild 5794 RMD160 0ccb454a05faa00f6ef9087ad979ae0bb12eeb57 SHA1 cf8cfe88e665772cc6e2c8d42718ff711d5b6c4c SHA256 3e7548fa407b4cc3dfc30618f100b515f82bd6920d5182cddbd5cf0003bf9d22
 EBUILD ccpn-2.1.5_p110308.ebuild 5794 RMD160 cd635335e052642cc6216b646aace2ab625a13e9 SHA1 6cc2205d0ef6b7304f3f6041f91a01a0da803fa6 SHA256 0a8f7cda9fbc99e1a9f16c3081dcd7920aae188fbecedbb2f1a4ee6fba90770d
 EBUILD ccpn-2.1.5_p110401.ebuild 5794 RMD160 d28f97f70b7d2c7e67680ccbc7dfa80f3c7e4c16 SHA1 995d70095ca28b0f4e24cb3dcab85ffd66a0e55f SHA256 1562e73abd583a6904b16bda472e39c0e384392014f76b706377ca871bf91033
+EBUILD ccpn-2.1.5_p110505.ebuild 5794 RMD160 a3762c3a58722466535819233def936b48cae77b SHA1 6c4550ef6ce6d1c36e0bf07aa060dda6395024ca SHA256 e1fb6a0f5ae16183080a4df866a917810505772ec8e756356ff67481ec24c2b4
 EBUILD ccpn-2.2.1_p110222.ebuild 5806 RMD160 9145fa2208f389a1399e91a3406190cb92ebb6bc SHA1 8b978ecaf8cb6992a958170b80a71f9399726b5c SHA256 a7102fefe463355b9a0119850fb3c1ae597c663814ac83e340908820eef97be5
 EBUILD ccpn-2.2.1_p110226.ebuild 5806 RMD160 ec1671816fa06ddc53a3bcd12faeb3869dff5094 SHA1 85922fac46dd185e7ebd3a3a4dfb61cf942b2adc SHA256 34942eea58c13108a7605de8b0721bdebd5b0b320b0b596c9d084e90f6059a85
 EBUILD ccpn-2.2.1_p110308.ebuild 5806 RMD160 a85b12264e5717e2564d97cbd9b1c3d5d685cd32 SHA1 371ff75268ca9a0cc9a37df35c4c57641ea70707 SHA256 7f9bfe05904a1c5320c3e11a1397227f0f6d5f1f59dd8288045aef84513a8c5d
 EBUILD ccpn-2.2.1_p110401.ebuild 5806 RMD160 9ead6d298b01630008ac0caab8b9a09b5af72feb SHA1 2977a61ae37b49ff5b978aaa274632f74de47ed4 SHA256 b7a12ad78c0b4ddac1400e4d26fa24b5c024de5cecbd814f7f922a348f2cdc60
-MISC ChangeLog 10380 RMD160 dc195f1478ab376269500ac5515f75844bc90d3e SHA1 63ee459e817c127876745604307d8e1e3c700a9c SHA256 f4500a5351de88f7acd1b323c5603fb550e7a17df11f5d379241fe3e7cfec751
+EBUILD ccpn-2.2.1_p110505.ebuild 5806 RMD160 215de2ad1e2c8a9de38aba1f4af80ab0c0a8bd79 SHA1 7b994bf07bd09beeb248cb8bd1ba7458aa8b9916 SHA256 d07bca5797de82970ca01e7c15b0390afd3b4003e200242f0a04529a95d2a3de
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 MISC metadata.xml 317 RMD160 6e56ad407f163d80504468f6fedcfb35fc31db00 SHA1 30b72b0612b1f91712537d24e3a2407eec50e1dd SHA256 1fb093ab05124dcd078fc93a4aa6f787f5829066e100ed98da8ecf65cece63fb
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diff --git a/sci-chemistry/ccpn/ccpn-2.1.5_p110505.ebuild b/sci-chemistry/ccpn/ccpn-2.1.5_p110505.ebuild
new file mode 100644
index 000000000000..c6fcc9cba2c2
--- /dev/null
+++ b/sci-chemistry/ccpn/ccpn-2.1.5_p110505.ebuild
@@ -0,0 +1,213 @@
+# Copyright 1999-2011 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/ccpn/ccpn-2.1.5_p110505.ebuild,v 1.1 2011/05/05 10:57:00 jlec Exp $
+
+EAPI="3"
+
+PYTHON_DEPEND="2:2.5"
+PYTHON_USE_WITH="ssl tk"
+
+inherit eutils portability python toolchain-funcs versionator
+
+PATCHSET="${PV##*_p}"
+MY_PN="${PN}mr"
+MY_PV="$(replace_version_separator 3 _ ${PV%%_p*})"
+MY_MAJOR="$(get_version_component_range 1-3)"
+
+DESCRIPTION="The Collaborative Computing Project for NMR"
+HOMEPAGE="http://www.ccpn.ac.uk/ccpn"
+SRC_URI="http://www.bio.cam.ac.uk/ccpn/download/${MY_PN}/analysis${MY_PV}.tar.gz"
+	[[ -n ${PATCHSET} ]] && SRC_URI="${SRC_URI}	http://dev.gentoo.org/~jlec/distfiles/ccpn-update-${MY_MAJOR}-${PATCHSET}.patch.bz2"
+
+SLOT="0"
+LICENSE="|| ( CCPN LGPL-2.1 )"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+IUSE="extendnmr +opengl"
+
+RDEPEND="
+	dev-lang/tk[threads]
+	>=dev-python/numpy-1.4
+	>=dev-tcltk/tix-8.4.3
+	=sci-libs/ccpn-data-"${MY_MAJOR}"*
+	x11-libs/libXext
+	x11-libs/libX11
+	opengl? (
+		media-libs/freeglut
+		dev-python/pyglet )"
+# We need to fix this
+#		sci-chemistry/mdd
+DEPEND="${RDEPEND}"
+PDEPEND="
+	extendnmr? (
+		sci-chemistry/aria
+		sci-chemistry/prodecomp )"
+
+RESTRICT="mirror"
+
+S="${WORKDIR}"/${MY_PN}/${MY_PN}$(get_version_component_range 1-2 ${PV})
+
+pkg_setup() {
+	python_set_active_version 2
+}
+
+src_prepare() {
+	[[ -n ${PATCHSET} ]] && \
+		epatch "${WORKDIR}"/ccpn-update-${MY_MAJOR}-${PATCHSET}.patch
+
+	epatch "${FILESDIR}"/${MY_PV}-parallel.patch
+
+	local tk_ver
+	local myconf
+
+	tk_ver="$(best_version dev-lang/tk | cut -d- -f3 | cut -d. -f1,2)"
+
+	if use opengl; then
+		GLUT_NEED_INIT="-DNEED_GLUT_INIT"
+		IGNORE_GL_FLAG=""
+		GL_FLAG="-DUSE_GL_TRUE"
+		GL_DIR="${EPREFIX}/usr"
+		GL_LIB="-lglut -lGLU -lGL"
+		GL_INCLUDE_FLAGS="-I\$(GL_DIR)/include"
+		GL_LIB_FLAGS="-L\$(GL_DIR)/$(get_libdir)"
+
+	else
+		IGNORE_GL_FLAG="-DIGNORE_GL"
+		GL_FLAG="-DUSE_GL_FALSE"
+	fi
+
+	GLUT_NOT_IN_GL=""
+	GLUT_FLAG="\$(GLUT_NEED_INIT) \$(GLUT_NOT_IN_GL)"
+
+	rm -rf data model doc license || die
+
+	sed \
+		-e "s:/usr:${EPREFIX}/usr:g" \
+		-e "s:^\(CC =\).*:\1 $(tc-getCC):g" \
+		-e "s:^\(OPT_FLAG =\).*:\1 ${CFLAGS}:g" \
+		-e "s:^\(LINK_FLAGS =.*\):\1 ${LDFLAGS}:g" \
+		-e "s:^\(IGNORE_GL_FLAG =\).*:\1 ${IGNORE_GL_FLAG}:g" \
+		-e "s:^\(GL_FLAG =\).*:\1 ${GL_FLAG}:g" \
+		-e "s:^\(GL_DIR =\).*:\1 ${GL_DIR}:g" \
+		-e "s:^\(GL_LIB =\).*:\1 ${GL_LIB}:g" \
+		-e "s:^\(GL_LIB_FLAGS =\).*:\1 ${GL_LIB_FLAGS}:g" \
+		-e "s:^\(GL_INCLUDE_FLAGS =\).*:\1 ${GL_INCLUDE_FLAGS}:g" \
+		-e "s:^\(GLUT_NEED_INIT =\).*:\1 ${GLUT_NEED_INIT}:g" \
+		-e "s:^\(GLUT_NOT_IN_GL =\).*:\1:g" \
+		-e "s:^\(X11_LIB_FLAGS =\).*:\1 -L${EPREFIX}/usr/$(get_libdir):g" \
+		-e "s:^\(TCL_LIB_FLAGS =\).*:\1 -L${EPREFIX}/usr/$(get_libdir):g" \
+		-e "s:^\(TK_LIB_FLAGS =\).*:\1 -L${EPREFIX}/usr/$(get_libdir):g" \
+		-e "s:^\(PYTHON_INCLUDE_FLAGS =\).*:\1 -I${EPREFIX}/$(python_get_includedir):g" \
+		-e "s:^\(PYTHON_LIB =\).*:\1 $(python_get_library -l):g" \
+		c/environment_default.txt > c/environment.txt
+}
+
+src_compile() {
+	emake -C c all links || die
+}
+
+src_install() {
+	local libdir
+	local tkver
+	local _wrapper
+
+	find . -name "*.pyc" -type d -delete
+
+	libdir=$(get_libdir)
+	tkver=$(best_version dev-lang/tk | cut -d- -f3 | cut -d. -f1,2)
+
+	_wrapper="analysis dangle dataShifter depositionFileImporter eci formatConverter pipe2azara"
+	use extendnmr && _wrapper="${_wrapper} extendNmr"
+	for wrapper in ${_wrapper}; do
+		sed \
+			-e "s:gentoo_sitedir:${EPREFIX}$(python_get_sitedir):g" \
+		   -e "s:gentoolibdir:${EPREFIX}/usr/${libdir}:g" \
+			-e "s:gentootk:${EPREFIX}/usr/${libdir}/tk${tkver}:g" \
+			-e "s:gentootcl:${EPREFIX}/usr/${libdir}/tclk${tkver}:g" \
+			-e "s:gentoopython:${EPREFIX}/usr/bin/python:g" \
+			-e "s://:/:g" \
+			"${FILESDIR}"/${wrapper} > "${T}"/${wrapper} || die "Fail fix ${wrapper}"
+		dobin "${T}"/${wrapper} || die "Failed to install ${wrapper}"
+	done
+
+	local in_path
+	local files
+	local pydocs
+
+	pydocs="$(find python -name doc -type d)"
+	rm -rf ${pydocs} || die
+
+	in_path=$(python_get_sitedir)/${PN}
+
+	for i in python/memops/format/compatibility/{Converters,part2/Converters2}.py; do
+	sed \
+		-e 's:#from __future__:from __future__:g' \
+		-i ${i} || die
+	done
+
+	insinto ${in_path}
+
+	dodir ${in_path}/c
+
+	ebegin "Installing main files"
+		doins -r python || die "main files installation failed"
+	eend
+		dosym ../../../..//share/doc/ccpn-data-${MY_MAJOR}/html ${in_path}/doc || die
+	for i in ${pydocs}; do
+		dosym /usr/share/doc/ccpn-data-${MY_MAJOR}/html/${i} ${in_path}/${i}
+	done
+
+	dosym /usr/share/ccpn/data ${in_path}/data
+	dosym /usr/share/ccpn/model ${in_path}/model
+
+	einfo "Adjusting permissions"
+
+	files="
+		cambridge/c/BayesPeakSeparator.so
+		ccp/c/StructUtil.so
+		ccp/c/StructStructure.so
+		ccp/c/StructBond.so
+		ccp/c/StructAtom.so
+		ccpnmr/c/DyAtomCoord.so
+		ccpnmr/c/DyDistConstraint.so
+		ccpnmr/c/DyDistForce.so
+		ccpnmr/c/AtomCoordList.so
+		ccpnmr/c/DyAtomCoordList.so
+		ccpnmr/c/ContourStyle.so
+		ccpnmr/c/ContourLevels.so
+		ccpnmr/c/SliceFile.so
+		ccpnmr/c/PeakCluster.so
+		ccpnmr/c/Dynamics.so
+		ccpnmr/c/Bacus.so
+		ccpnmr/c/Midge.so
+		ccpnmr/c/DyDistConstraintList.so
+		ccpnmr/c/WinPeakList.so
+		ccpnmr/c/PeakList.so
+		ccpnmr/c/DistConstraint.so
+		ccpnmr/c/CloudUtil.so
+		ccpnmr/c/DistForce.so
+		ccpnmr/c/DistConstraintList.so
+		ccpnmr/c/AtomCoord.so
+		ccpnmr/c/DyDynamics.so
+		ccpnmr/c/ContourFile.so
+		memops/c/ShapeFile.so
+		memops/c/BlockFile.so
+		memops/c/PdfHandler.so
+		memops/c/MemCache.so
+		memops/c/FitMethod.so
+		memops/c/PsHandler.so
+		memops/c/GlHandler.so
+		memops/c/StoreFile.so
+		memops/c/StoreHandler.so
+		memops/c/TkHandler.so"
+	for FILE in ${files}; do
+		fperms 755 ${in_path}/python/${FILE}
+	done
+}
+
+pkg_postinst() {
+	python_mod_optimize ${PN}
+}
+
+pkg_postrm() {
+	python_mod_cleanup ${PN}
+}
diff --git a/sci-chemistry/ccpn/ccpn-2.2.1_p110505.ebuild b/sci-chemistry/ccpn/ccpn-2.2.1_p110505.ebuild
new file mode 100644
index 000000000000..35a1ca6efd37
--- /dev/null
+++ b/sci-chemistry/ccpn/ccpn-2.2.1_p110505.ebuild
@@ -0,0 +1,213 @@
+# Copyright 1999-2011 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/ccpn/ccpn-2.2.1_p110505.ebuild,v 1.1 2011/05/05 10:57:00 jlec Exp $
+
+EAPI="3"
+
+PYTHON_DEPEND="2:2.5"
+PYTHON_USE_WITH="ssl tk"
+
+inherit eutils portability python toolchain-funcs versionator
+
+PATCHSET="${PV##*_p}"
+MY_PN="${PN}mr"
+MY_PV="$(replace_version_separator 3 _ ${PV%%_p*})"
+MY_MAJOR="$(get_version_component_range 1-3)"
+
+DESCRIPTION="The Collaborative Computing Project for NMR"
+SRC_URI="http://www.bio.cam.ac.uk/ccpn/download/${MY_PN}/analysis${MY_PV}.tar.gz"
+	[[ -n ${PATCHSET} ]] && SRC_URI="${SRC_URI}	http://dev.gentoo.org/~jlec/distfiles/ccpn-update-${MY_MAJOR}-${PATCHSET}.patch.bz2"
+HOMEPAGE="http://www.ccpn.ac.uk/ccpn"
+
+SLOT="0"
+LICENSE="|| ( CCPN LGPL-2.1 )"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+IUSE="extendnmr +opengl"
+
+RDEPEND="
+	dev-lang/tk[threads]
+	>=dev-python/numpy-1.4
+	>=dev-tcltk/tix-8.4.3
+	=sci-libs/ccpn-data-"${MY_MAJOR}"*
+	x11-libs/libXext
+	x11-libs/libX11
+	opengl? (
+		media-libs/freeglut
+		dev-python/pyglet )"
+# We need to fix this
+#		sci-chemistry/mdd
+DEPEND="${RDEPEND}"
+PDEPEND="
+	extendnmr? (
+		sci-chemistry/aria
+		sci-chemistry/prodecomp )"
+
+RESTRICT="mirror"
+
+S="${WORKDIR}"/${MY_PN}/${MY_PN}$(get_version_component_range 1-2 ${PV})
+
+pkg_setup() {
+	python_set_active_version 2
+}
+
+src_prepare() {
+	[[ -n ${PATCHSET} ]] && \
+		epatch "${WORKDIR}"/ccpn-update-${MY_MAJOR}-${PATCHSET}.patch
+
+	epatch "${FILESDIR}"/${MY_PV}-parallel.patch
+
+	local tk_ver
+	local myconf
+
+	tk_ver="$(best_version dev-lang/tk | cut -d- -f3 | cut -d. -f1,2)"
+
+	if use opengl; then
+		GLUT_NEED_INIT="-DNEED_GLUT_INIT"
+		IGNORE_GL_FLAG=""
+		GL_FLAG="-DUSE_GL_TRUE"
+		GL_DIR="${EPREFIX}/usr"
+		GL_LIB="-lglut -lGLU -lGL"
+		GL_INCLUDE_FLAGS="-I\$(GL_DIR)/include"
+		GL_LIB_FLAGS="-L\$(GL_DIR)/$(get_libdir)"
+
+	else
+		IGNORE_GL_FLAG="-DIGNORE_GL"
+		GL_FLAG="-DUSE_GL_FALSE"
+	fi
+
+	GLUT_NOT_IN_GL=""
+	GLUT_FLAG="\$(GLUT_NEED_INIT) \$(GLUT_NOT_IN_GL)"
+
+	rm -rf data model doc license || die
+
+	sed \
+		-e "s:/usr:${EPREFIX}/usr:g" \
+		-e "s:^\(CC =\).*:\1 $(tc-getCC):g" \
+		-e "s:^\(OPT_FLAG =\).*:\1 ${CFLAGS}:g" \
+		-e "s:^\(LINK_FLAGS =.*\):\1 ${LDFLAGS}:g" \
+		-e "s:^\(IGNORE_GL_FLAG =\).*:\1 ${IGNORE_GL_FLAG}:g" \
+		-e "s:^\(GL_FLAG =\).*:\1 ${GL_FLAG}:g" \
+		-e "s:^\(GL_DIR =\).*:\1 ${GL_DIR}:g" \
+		-e "s:^\(GL_LIB =\).*:\1 ${GL_LIB}:g" \
+		-e "s:^\(GL_LIB_FLAGS =\).*:\1 ${GL_LIB_FLAGS}:g" \
+		-e "s:^\(GL_INCLUDE_FLAGS =\).*:\1 ${GL_INCLUDE_FLAGS}:g" \
+		-e "s:^\(GLUT_NEED_INIT =\).*:\1 ${GLUT_NEED_INIT}:g" \
+		-e "s:^\(GLUT_NOT_IN_GL =\).*:\1:g" \
+		-e "s:^\(X11_LIB_FLAGS =\).*:\1 -L${EPREFIX}/usr/$(get_libdir):g" \
+		-e "s:^\(TCL_LIB_FLAGS =\).*:\1 -L${EPREFIX}/usr/$(get_libdir):g" \
+		-e "s:^\(TK_LIB_FLAGS =\).*:\1 -L${EPREFIX}/usr/$(get_libdir):g" \
+		-e "s:^\(PYTHON_INCLUDE_FLAGS =\).*:\1 -I${EPREFIX}/$(python_get_includedir):g" \
+		-e "s:^\(PYTHON_LIB =\).*:\1 $(python_get_library -l):g" \
+		c/environment_default.txt > c/environment.txt
+}
+
+src_compile() {
+	emake -C c all links || die
+}
+
+src_install() {
+	local libdir
+	local tkver
+	local _wrapper
+
+	find . -name "*.pyc" -type d -delete
+
+	libdir=$(get_libdir)
+	tkver=$(best_version dev-lang/tk | cut -d- -f3 | cut -d. -f1,2)
+
+	_wrapper="analysis dangle dataShifter depositionFileImporter eci formatConverter pipe2azara xeasy2azara"
+	use extendnmr && _wrapper="${_wrapper} extendNmr"
+	for wrapper in ${_wrapper}; do
+		sed \
+			-e "s:gentoo_sitedir:${EPREFIX}$(python_get_sitedir):g" \
+		   -e "s:gentoolibdir:${EPREFIX}/usr/${libdir}:g" \
+			-e "s:gentootk:${EPREFIX}/usr/${libdir}/tk${tkver}:g" \
+			-e "s:gentootcl:${EPREFIX}/usr/${libdir}/tclk${tkver}:g" \
+			-e "s:gentoopython:${EPREFIX}/usr/bin/python:g" \
+			-e "s://:/:g" \
+			"${FILESDIR}"/${wrapper} > "${T}"/${wrapper} || die "Fail fix ${wrapper}"
+		dobin "${T}"/${wrapper} || die "Failed to install ${wrapper}"
+	done
+
+	local in_path
+	local files
+	local pydocs
+
+	pydocs="$(find python -name doc -type d)"
+	rm -rf ${pydocs} || die
+
+	in_path=$(python_get_sitedir)/${PN}
+
+	for i in python/memops/format/compatibility/{Converters,part2/Converters2}.py; do
+	sed \
+		-e 's:#from __future__:from __future__:g' \
+		-i ${i} || die
+	done
+
+	insinto ${in_path}
+
+	dodir ${in_path}/c
+
+	ebegin "Installing main files"
+		doins -r python || die "main files installation failed"
+	eend
+		dosym ../../../..//share/doc/ccpn-data-${MY_MAJOR}/html ${in_path}/doc || die
+	for i in ${pydocs}; do
+		dosym /usr/share/doc/ccpn-data-${MY_MAJOR}/html/${i} ${in_path}/${i}
+	done
+
+	dosym /usr/share/ccpn/data ${in_path}/data
+	dosym /usr/share/ccpn/model ${in_path}/model
+
+	einfo "Adjusting permissions"
+
+	files="
+		cambridge/c/BayesPeakSeparator.so
+		ccp/c/StructUtil.so
+		ccp/c/StructStructure.so
+		ccp/c/StructBond.so
+		ccp/c/StructAtom.so
+		ccpnmr/c/DyAtomCoord.so
+		ccpnmr/c/DyDistConstraint.so
+		ccpnmr/c/DyDistForce.so
+		ccpnmr/c/AtomCoordList.so
+		ccpnmr/c/DyAtomCoordList.so
+		ccpnmr/c/ContourStyle.so
+		ccpnmr/c/ContourLevels.so
+		ccpnmr/c/SliceFile.so
+		ccpnmr/c/PeakCluster.so
+		ccpnmr/c/Dynamics.so
+		ccpnmr/c/Bacus.so
+		ccpnmr/c/Midge.so
+		ccpnmr/c/DyDistConstraintList.so
+		ccpnmr/c/WinPeakList.so
+		ccpnmr/c/PeakList.so
+		ccpnmr/c/DistConstraint.so
+		ccpnmr/c/CloudUtil.so
+		ccpnmr/c/DistForce.so
+		ccpnmr/c/DistConstraintList.so
+		ccpnmr/c/AtomCoord.so
+		ccpnmr/c/DyDynamics.so
+		ccpnmr/c/ContourFile.so
+		memops/c/ShapeFile.so
+		memops/c/BlockFile.so
+		memops/c/PdfHandler.so
+		memops/c/MemCache.so
+		memops/c/FitMethod.so
+		memops/c/PsHandler.so
+		memops/c/GlHandler.so
+		memops/c/StoreFile.so
+		memops/c/StoreHandler.so
+		memops/c/TkHandler.so"
+	for FILE in ${files}; do
+		fperms 755 ${in_path}/python/${FILE}
+	done
+}
+
+pkg_postinst() {
+	python_mod_optimize ${PN}
+}
+
+pkg_postrm() {
+	python_mod_cleanup ${PN}
+}