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| author |   Justin Lecher <jlec@gentoo.org> | 2011-04-30 11:00:43 +0000 |
|---|---|---|
| committer | Justin Lecher <jlec@gentoo.org> | 2011-04-30 11:00:43 +0000 |
| commit | c0c39064de108c5b4d0ef9233d7b48e49e8e5bf4 (patch) | |
| tree | ca5a8f23c7560bd7c5555e0f85762223381e2e0c /sci-biology | |
| parent | Add gnome-pty-helper, needed for vte-0.28 (diff) | |
| download | historical-c0c39064de108c5b4d0ef9233d7b48e49e8e5bf4.tar.gz historical-c0c39064de108c5b4d0ef9233d7b48e49e8e5bf4.tar.bz2 historical-c0c39064de108c5b4d0ef9233d7b48e49e8e5bf4.zip | |
Version Bump
Package-Manager: portage-2.2.0_alpha30/cvs/Linux x86_64
Diffstat (limited to 'sci-biology')
| -rw-r--r-- | sci-biology/rebase/ChangeLog | 7 | ||||
| -rw-r--r-- | sci-biology/rebase/Manifest | 10 | ||||
| -rw-r--r-- | sci-biology/rebase/rebase-1105.ebuild | 53 |
3 files changed, 65 insertions, 5 deletions
diff --git a/sci-biology/rebase/ChangeLog b/sci-biology/rebase/ChangeLog index e942e70937cf..8fbe8fab9318 100644 --- a/sci-biology/rebase/ChangeLog +++ b/sci-biology/rebase/ChangeLog @@ -1,6 +1,11 @@ # ChangeLog for sci-biology/rebase # Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/ChangeLog,v 1.103 2011/04/01 06:42:50 jlec Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/ChangeLog,v 1.104 2011/04/30 11:00:42 jlec Exp $ + +*rebase-1105 (30 Apr 2011) + + 30 Apr 2011; Justin Lecher <jlec@gentoo.org> +rebase-1105.ebuild: + Version Bump *rebase-1104 (01 Apr 2011) diff --git a/sci-biology/rebase/Manifest b/sci-biology/rebase/Manifest index 924e0fe23610..bc9afa1670fe 100644 --- a/sci-biology/rebase/Manifest +++ b/sci-biology/rebase/Manifest @@ -4,15 +4,17 @@ Hash: SHA1 DIST rebase-1006.tar.xz 21163928 RMD160 98fd3a9d8a82a663e420fc2948de0280b44d0f1c SHA1 095b8030cb5ab47d2e519ce5f7046eeef0522e3d SHA256 9d5dd0429f4000cd0a4a96a9631d48eeea8fd4e6868b344a4e636cc43e1c7fdd DIST rebase-1103.tar.xz 18171976 RMD160 8d96576b56112ebe90a8bf4e8f5a45164573e9f5 SHA1 02bc451d06c4b821b13d4ee4e9fcecc0bc59e2a5 SHA256 241b8ee9e8840b33545996e39529e9ec1cf54723f5c599a050907da8f5f837cf DIST rebase-1104.tar.xz 18310220 RMD160 a9279e27c85092decd0572087c5f941bea058ff8 SHA1 fefdd21f06ab32d7bbbf8d6a6e3113af0b499bdd SHA256 9240405bd18d74a4fabc398eacc463a2e9ef7334ca8cde23f9980e8c7558cb34 +DIST rebase-1105.tar.xz 18584656 RMD160 86811fb9135452475cc5e275fd5df2025a41ce23 SHA1 d513a2210963de0a98569d79c4c8a2a2fbe2bc3f SHA256 e10365a15e280f5166104149df437683904bf0e2eef613823f3768b4da8ff17d EBUILD rebase-1006.ebuild 1508 RMD160 5ce7f179e01935bb02605e545b9f5484c2cac0fc SHA1 e13678167b2e6d6dace889133fcd93ce93082c48 SHA256 439ee7b7f5505d085feb28d39aab5b46f7ef51d67439c6d509a3242079bd4527 EBUILD rebase-1103.ebuild 1565 RMD160 0e4e4761845b67721cbff8702691dc0863aaf8cc SHA1 d949baf0e584399fdaf3ebf46d00d011c363c3c2 SHA256 89653974413b5b4b5a5c9bad51df656923ca61a82909cdc55bbdb34475077a18 EBUILD rebase-1104.ebuild 1565 RMD160 2c7e26f7729ae13235587fce188ece362abfb396 SHA1 7a13c6844a637bcffd798a312ea49e09bef60cb9 SHA256 8b5d2f213ba4bbe29c0d420fde7bdfee5ef51eb5c7043ef602861ebb0a28222e -MISC ChangeLog 13616 RMD160 363590b2ce0eec6321dc5fa9eecf6fcdfddc7e8c SHA1 aaa4380bc9332c5c1b110f079368035d982ab065 SHA256 4fef3dd5df7429c7aa76211c18230728c0496c02e31c60598189da63d001ecb1 +EBUILD rebase-1105.ebuild 1565 RMD160 493273505acd3724915108aea793fa02d4790249 SHA1 00d231f7df1b1cbc78013b33e162a91aeb79f218 SHA256 114c2a724619e7838c867694f96c9ac08c209531d1f44fb8d9a60cab4db3c285 +MISC ChangeLog 13728 RMD160 41b9a386fd6cf3f7c474662606beac31a2251934 SHA1 7b0f6109a373844965a4a683340082e40d068d5a SHA256 d57853e329226dc57ca601734f41f42e14152c7f79c8602921ae31b8047b283c MISC metadata.xml 811 RMD160 f1dd0a77488312defebf403ac55aa57e4d15bcdc SHA1 6fefbf2aa855c5aba0ff15dfb9c3ea90bd104482 SHA256 65603e5b252a8afc1f9e2a5db69d8dcac525f6dc669cbe1eb23bc47624c8bde2 -----BEGIN PGP SIGNATURE----- Version: GnuPG v2.0.17 (GNU/Linux) -iEYEARECAAYFAk2Vc/AACgkQgAnW8HDreRaznwCeP4j6ErW7284dcyjJgkYXWKaG -DlsAnRf+6DrbEdZBESh7RYLiuwBfGhRA -=5DjW +iEYEARECAAYFAk276+AACgkQgAnW8HDreRbkGwCglK7YCkuLD1MrsFQ8wkULD0hQ +sRIAoIBfaNL7F2YptZsPJwULsEPmWUEA +=716F -----END PGP SIGNATURE----- diff --git a/sci-biology/rebase/rebase-1105.ebuild b/sci-biology/rebase/rebase-1105.ebuild new file mode 100644 index 000000000000..be9b302f6324 --- /dev/null +++ b/sci-biology/rebase/rebase-1105.ebuild @@ -0,0 +1,53 @@ +# Copyright 1999-2011 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/rebase-1105.ebuild,v 1.1 2011/04/30 11:00:43 jlec Exp $ + +EAPI="3" + +MY_PV=${PV#1} + +DESCRIPTION="A restriction enzyme database" +HOMEPAGE="http://rebase.neb.com" +SRC_URI=" + mirror://gentoo/${P}.tar.xz + http://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz" + +SLOT="0" +# Minimal build keeps only the indexed files (if applicable) and the +# documentation. The non-indexed database is not installed. +IUSE="emboss minimal" +LICENSE="public-domain" +KEYWORDS="~amd64 ~ppc ~ppc64 ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris ~x86-solaris" + +RDEPEND="emboss? ( >=sci-biology/emboss-5.0.0 )" +DEPEND="${RDEPEND}" + +RESTRICT="binchecks strip" + +src_compile() { + if use emboss; then + echo; einfo "Indexing Rebase for usage with EMBOSS." + mkdir REBASE + EMBOSS_DATA="." rebaseextract -auto -infile withrefm.${MY_PV} \ + -protofile proto.${MY_PV} -equivalences \ + || die "Indexing Rebase failed." + echo + fi +} + +src_install() { + if ! use minimal; then + insinto /usr/share/${PN} + doins withrefm.${MY_PV} proto.${MY_PV} || die \ + "Failed to install raw database." + fi + newdoc REBASE.DOC README || die "Failed to install documentation." + if use emboss; then + insinto /usr/share/EMBOSS/data/REBASE + doins REBASE/embossre.{enz,ref,sup} || die \ + "Failed to install EMBOSS data files." + insinto /usr/share/EMBOSS/data + doins REBASE/embossre.equ \ + || die "Failed to install enzyme prototypes file." + fi +} |