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| author |   Andrey Kislyuk <weaver@gentoo.org> | 2012-02-25 18:05:05 +0000 |
|---|---|---|
| committer | Andrey Kislyuk <weaver@gentoo.org> | 2012-02-25 18:05:05 +0000 |
| commit | b1a8cf21a117336c86e1b443e2ad4a379970f420 (patch) | |
| tree | 7d7cdb98551ee5f41f3a9dcd0c772feb0f781031 /sci-biology | |
| parent | Stable on alpha, bug #400225 (diff) | |
| download | historical-b1a8cf21a117336c86e1b443e2ad4a379970f420.tar.gz historical-b1a8cf21a117336c86e1b443e2ad4a379970f420.tar.bz2 historical-b1a8cf21a117336c86e1b443e2ad4a379970f420.zip | |
New package, ebuild written by me
Package-Manager: portage-2.2.0_alpha74/cvs/Linux x86_64
Diffstat (limited to 'sci-biology')
| -rw-r--r-- | sci-biology/express/ChangeLog | 10 | ||||
| -rw-r--r-- | sci-biology/express/Manifest | 14 | ||||
| -rw-r--r-- | sci-biology/express/express-0.9.5.ebuild | 33 | ||||
| -rw-r--r-- | sci-biology/express/metadata.xml | 9 |
4 files changed, 66 insertions, 0 deletions
diff --git a/sci-biology/express/ChangeLog b/sci-biology/express/ChangeLog new file mode 100644 index 000000000000..7ca8c33c22b6 --- /dev/null +++ b/sci-biology/express/ChangeLog @@ -0,0 +1,10 @@ +# ChangeLog for sci-biology/express +# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/express/ChangeLog,v 1.1 2012/02/25 18:05:05 weaver Exp $ + +*express-0.9.5 (25 Feb 2012) + + 25 Feb 2012; Andrey Kislyuk <weaver@gentoo.org> +express-0.9.5.ebuild, + +metadata.xml: + New package, ebuild written by me + diff --git a/sci-biology/express/Manifest b/sci-biology/express/Manifest new file mode 100644 index 000000000000..3812cb6499b0 --- /dev/null +++ b/sci-biology/express/Manifest @@ -0,0 +1,14 @@ +-----BEGIN PGP SIGNED MESSAGE----- +Hash: SHA1 + +DIST express-0.9.5-src.tgz 766024 RMD160 eb21c8dcde5f105b74ffd6fc702b45f5ff58933a SHA1 98e440a845aa62fd6161f7bbea857a357ef2ebe6 SHA256 e17250d62750560c2dc9cb579f58784b5076afb74088f36523ddd623e08bc022 +EBUILD express-0.9.5.ebuild 950 RMD160 38e4af9fea5fc6e0f0798924299a7bbd7ee94bda SHA1 0d109c7021be1e287c9098d5e385b43335a62a39 SHA256 f85d489d8c03ae14720138327c2dc48d887359a5945c3d465601d43f7846930d +MISC ChangeLog 368 RMD160 214a98513b92744b117f6aa5468edfda27a23455 SHA1 1ba125cd08ac06f0893e1ea2b62777613ac88723 SHA256 4601bbe247fb5a22dc2f55b7710c99318ec9940cb1a069c300ce1587c9fd4b4b +MISC metadata.xml 259 RMD160 d9d81b67d635fabd81aef8ae0edf971211ae9072 SHA1 8e32f751c67ff891fa35405a2cf6fb33752d6eb1 SHA256 541c3fbcf299d9a8ccf4132ee61f9e53a5d737cefdaa6fdc77764d8d4c7f3110 +-----BEGIN PGP SIGNATURE----- +Version: GnuPG v1.4.11 (GNU/Linux) + +iEYEARECAAYFAk9JItcACgkQ8xSwyhbn2ObbgQCggYAJYOfbv0W5BgkMxNRC/qt1 +fC4An0waUibbdpGoYMlwCITwkIjCp+uR +=zb0V +-----END PGP SIGNATURE----- diff --git a/sci-biology/express/express-0.9.5.ebuild b/sci-biology/express/express-0.9.5.ebuild new file mode 100644 index 000000000000..56dfe3e1b520 --- /dev/null +++ b/sci-biology/express/express-0.9.5.ebuild @@ -0,0 +1,33 @@ +# Copyright 1999-2012 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/express/express-0.9.5.ebuild,v 1.1 2012/02/25 18:05:05 weaver Exp $ + +EAPI=4 + +inherit cmake-utils + +DESCRIPTION="Streaming RNA-Seq Analysis" +HOMEPAGE="http://bio.math.berkeley.edu/eXpress/" +SRC_URI="http://bio.math.berkeley.edu/eXpress/downloads/express-${PV}/express-${PV}-src.tgz" + +LICENSE="Artistic" +SLOT="0" +IUSE="" +KEYWORDS="~amd64" + +DEPEND="sys-libs/zlib + dev-libs/boost:1.46 + sci-biology/bamtools" +RDEPEND="${DEPEND}" + +S="${WORKDIR}/${P}-src" + +CMAKE_USE_DIR="${S}/src" + +src_prepare() { + sed -i -e 's|"${CMAKE_CURRENT_SOURCE_DIR}/../bamtools/lib/libbamtools.a"|bamtools|' \ + -e '1 a find_package(Boost 1.46 COMPONENTS filesystem program_options thread)' \ + -e '1 a find_package(ZLIB)' \ + -e '/add_executable/ a include_directories("/usr/include/bamtools")' \ + src/CMakeLists.txt || die +} diff --git a/sci-biology/express/metadata.xml b/sci-biology/express/metadata.xml new file mode 100644 index 000000000000..3302123e5718 --- /dev/null +++ b/sci-biology/express/metadata.xml @@ -0,0 +1,9 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <maintainer> + <email>weaver@gentoo.org</email> + <name>Andrey Kislyuk</name> + </maintainer> + <herd>sci-biology</herd> +</pkgmetadata> |