Version bump, update license

Package-Manager: portage-2.2_rc86/cvs/Linux x86_64

4 files changed, 44 insertions, 5 deletions

diff --git a/sci-biology/amos/ChangeLog b/sci-biology/amos/ChangeLog
index 25a1c58ce787..09b030d12f60 100644
--- a/sci-biology/amos/ChangeLog
+++ b/sci-biology/amos/ChangeLog
@@ -1,6 +1,11 @@
 # ChangeLog for sci-biology/amos
-# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/amos/ChangeLog,v 1.7 2010/02/12 02:36:43 weaver Exp $
+# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/amos/ChangeLog,v 1.8 2011/02/03 00:57:20 weaver Exp $
+
+*amos-3.0.0 (03 Feb 2011)
+
+  03 Feb 2011; Andrey Kislyuk <weaver@gentoo.org> +amos-3.0.0.ebuild:
+  Version bump
 
   11 Feb 2010; Andrey Kislyuk <weaver@gentoo.org> -amos-2.0.8.ebuild:
   Drop old ebuild
diff --git a/sci-biology/amos/Manifest b/sci-biology/amos/Manifest
index 87d2a567e484..3ccb2bd5347a 100644
--- a/sci-biology/amos/Manifest
+++ b/sci-biology/amos/Manifest
@@ -1,5 +1,7 @@
 AUX amos-2.0.8-gcc44.patch 3555 RMD160 8bf9d9f6290b573b373542d180f8f788d8042334 SHA1 0d5b92c9203ce4a0ba4681b301ee419984d9b3ba SHA256 e07bd2b40ee21db39d096db5367ef7c12baa78ba776101919945f60b8507d5b1
 DIST amos-2.0.8.tar.gz 1757124 RMD160 98cfa30081e849a36285e159010ab85b3a116eeb SHA1 3b59c07325b108df9683a57dc168cdf60714cedc SHA256 5c8adf33816278411ead7ad2f6509ebfee2388f9cb89d2196d8e5ad9b0c8ffd1
+DIST amos-3.0.0.tar.gz 1940705 RMD160 3c2f2819696b01a5e7fc293e0f76f5ee591c7b57 SHA1 7ffc685ae9bb354b163916609189d3cb3c6775b5 SHA256 6426ca20dd98b7f9329c016a8b61b98f7d71bf1527e32441efca8beaf55792af
 EBUILD amos-2.0.8-r1.ebuild 843 RMD160 56cb133c15ee3edb74eab731990465e9a5d38ad4 SHA1 b7880ccf266a5779a22acd80c436c8953d01540a SHA256 f40d1a766830bddc1dca3ab715e7a85270acd5871343815b304ab4f55a053475
-MISC ChangeLog 1107 RMD160 be29a63bad360da8cb490be5eb6a7b809c5e05a9 SHA1 341cd2ebfa6f1d282d9deb23d9633ff82dc4a830 SHA256 671625607f2c42117836f9b2ef6dbb86855f5739524b8f2c6783152eccbf9d49
+EBUILD amos-3.0.0.ebuild 678 RMD160 944b68a1d405db7a9f65609f301464f01d4199ae SHA1 49966515c2f3cf36952373afbaa03517bbb17678 SHA256 d9fc4c66c2b339e7e222fc8d69c7644790acd85a9306a6ec4204ed55a43c966c
+MISC ChangeLog 1220 RMD160 84e137dbea1340034e88e8735a8dfb62ff63c70e SHA1 4684f7f1e6f07835cd914f2036822c8e6a22a0d9 SHA256 18c167cb35c98d9e844ccf066036acbd7a274422476f349d48d9a75062461238
 MISC metadata.xml 259 RMD160 d9d81b67d635fabd81aef8ae0edf971211ae9072 SHA1 8e32f751c67ff891fa35405a2cf6fb33752d6eb1 SHA256 541c3fbcf299d9a8ccf4132ee61f9e53a5d737cefdaa6fdc77764d8d4c7f3110
diff --git a/sci-biology/amos/amos-3.0.0.ebuild b/sci-biology/amos/amos-3.0.0.ebuild
new file mode 100644
index 000000000000..e302c5b6a68f
--- /dev/null
+++ b/sci-biology/amos/amos-3.0.0.ebuild
@@ -0,0 +1,30 @@
+# Copyright 1999-2011 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/amos/amos-3.0.0.ebuild,v 1.1 2011/02/03 00:57:20 weaver Exp $
+
+EAPI="3"
+
+inherit eutils
+
+DESCRIPTION="A Modular, Open-Source whole genome assembler"
+HOMEPAGE="http://amos.sourceforge.net/"
+SRC_URI="mirror://sourceforge/${PN}/${P}.tar.gz"
+
+LICENSE="Artistic"
+SLOT="0"
+IUSE=""
+KEYWORDS="~amd64 ~x86"
+
+#DEPEND=">=x11-libs/qt-3.3:3"
+DEPEND=""
+RDEPEND="${DEPEND}
+	dev-perl/DBI
+	sci-biology/mummer"
+
+src_compile() {
+	emake -j1 || die "emake failed"
+}
+
+src_install() {
+	emake DESTDIR="${D}" install || die "emake install failed"
+}
diff --git a/sci-biology/augustus/Manifest b/sci-biology/augustus/Manifest
index e61951de44eb..d8b840d19f48 100644
--- a/sci-biology/augustus/Manifest
+++ b/sci-biology/augustus/Manifest
@@ -1,6 +1,8 @@
 DIST augustus.2.3.1.src.tar.gz 27314034 RMD160 232a5e7c6469e5bb2a4f839e823dcb86c9b45dc9 SHA1 a0d951c4bf13a7c8c2cbc7d43a94e4429fa4dfff SHA256 d8914deb74abe52d4a9922a3f976ca272bdf1f666f5a957ff4d011b5846690dd
 DIST augustus.2.4.src.tar.gz 34114141 RMD160 9ad0c98f55f79060115eda228ad4d88a5e7ae63e SHA1 dfadcdb77b8c67ccb1a9603400ba996eb640c24a SHA256 8b6667ef479458f16dc2b4763bfbe671ba1551cab6cc81fc0522d9b992da939c
+DIST augustus.2.5.tar.gz 54589077 RMD160 60f5c1e7c21f12c9475afdcc7948d0af9a767b5b SHA1 1abc9f966d8c7a361a373d3a4c7303b7a4dbf48b SHA256 0b92eb4ec0242e97022a80dd2708140755556fb5d4a0f0b7334e81d033cb501f
 EBUILD augustus-2.3.1.ebuild 879 RMD160 36364895a163edbb046e1de2f28911020eb8aac3 SHA1 83c984380bf5d27928eb9e5c17059e73071f6f97 SHA256 34dbac0a95d40bd3008c29baaefa94f57ecdda8bbf11ca693770bfd72cda428f
-EBUILD augustus-2.4.ebuild 871 RMD160 89b7553497c7d7f45d78d1f31e0267e5a5dede4e SHA1 794eb851f7434b9f11c726dba21a249a9b059f50 SHA256 9a6b8c4c01bcf46ce0b7221888f9ab8beaf55163e7d71bc722eede5095ce5d56
-MISC ChangeLog 1435 RMD160 68acba681103681e96b579701189f602e264540d SHA1 f7eb01df08193a1361f9eb6fce9b37e5cd8600db SHA256 59c20badf06d187533c7d78418c863f4c09bfe9762ed944c2a2b34819fd4ae4f
+EBUILD augustus-2.4.ebuild 875 RMD160 5fdb9a4c0378a401579b25f11b0b75af626387d9 SHA1 536cb26e4f22f9f590e0e27fe90793e2c82c50f4 SHA256 0284b5facefb153132565213045b42724b4f156f9fcdea49a65c48ed70cdec58
+EBUILD augustus-2.5.ebuild 873 RMD160 78f19a2218c4d335c3728966dc3813cdd68dfe52 SHA1 06728821b1372be1edaa62d1547fa9ffc9263865 SHA256 422866a0b944a2f3c58d18725e7ead10a6266312d3845be89fac141189c818a8
+MISC ChangeLog 1591 RMD160 526757a715f8ab0c5249bdf5dfad33f8cbd4a351 SHA1 c40cc763f900b30858b5d6b5e36399a6260851e8 SHA256 3d5f445566b721afc4a73eb1f066f61f58f133623086695d8c1716af2fda671f
 MISC metadata.xml 259 RMD160 d9d81b67d635fabd81aef8ae0edf971211ae9072 SHA1 8e32f751c67ff891fa35405a2cf6fb33752d6eb1 SHA256 541c3fbcf299d9a8ccf4132ee61f9e53a5d737cefdaa6fdc77764d8d4c7f3110