diff options
| author |   Andrey Kislyuk <weaver@gentoo.org> | 2009-03-09 19:57:28 +0000 |
|---|---|---|
| committer | Andrey Kislyuk <weaver@gentoo.org> | 2009-03-09 19:57:28 +0000 |
| commit | 82ba8cd039d408e631b7119360ca776c55fb701f (patch) | |
| tree | 6fcffbc0053f703e285328ac21f5ff3cc8310797 /sci-biology | |
| parent | Sync kde4 eclasses with kde-testing (review by scarabeus and jmbsvicetto). (diff) | |
| download | historical-82ba8cd039d408e631b7119360ca776c55fb701f.tar.gz historical-82ba8cd039d408e631b7119360ca776c55fb701f.tar.bz2 historical-82ba8cd039d408e631b7119360ca776c55fb701f.zip | |
QA fixes
Package-Manager: portage-2.2_rc20/cvs/Linux 2.6.26-gentoo-r4 x86_64
Diffstat (limited to 'sci-biology')
| -rw-r--r-- | sci-biology/mummer/ChangeLog | 5 | ||||
| -rw-r--r-- | sci-biology/mummer/Manifest | 4 | ||||
| -rw-r--r-- | sci-biology/mummer/mummer-3.21.ebuild | 25 |
3 files changed, 17 insertions, 17 deletions
diff --git a/sci-biology/mummer/ChangeLog b/sci-biology/mummer/ChangeLog index 2cd72219071e..67fd68b9c783 100644 --- a/sci-biology/mummer/ChangeLog +++ b/sci-biology/mummer/ChangeLog @@ -1,6 +1,9 @@ # ChangeLog for sci-biology/mummer # Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/mummer/ChangeLog,v 1.5 2009/03/09 15:55:37 weaver Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/mummer/ChangeLog,v 1.6 2009/03/09 19:57:28 weaver Exp $ + + 09 Mar 2009; Andrey Kislyuk <weaver@gentoo.org> mummer-3.21.ebuild: + QA fixes 09 Mar 2009; Andrey Kislyuk <weaver@gentoo.org> mummer-3.20.ebuild, mummer-3.21.ebuild: diff --git a/sci-biology/mummer/Manifest b/sci-biology/mummer/Manifest index a8171738ccf8..2f2d4bb2ec39 100644 --- a/sci-biology/mummer/Manifest +++ b/sci-biology/mummer/Manifest @@ -2,6 +2,6 @@ AUX mummer-3.20-gcc43.patch 258 RMD160 4d04d0d51ac3a0e5281474acc6ede7f32e332bc1 DIST MUMmer3.20.tar.gz 3155446 RMD160 7e5fefef359c6a6ee49f2ebf14dc18caa19f48fb SHA1 68d6742de93d8524236ccf538f32ba8bb4edf7cc SHA256 9c7880b4ce25ef3c6bed9ccdc26f1c4d7e74eb0ef1ce403907790c0f96c0f260 DIST MUMmer3.21.tar.gz 3155965 RMD160 3a112ee3bc92c1585d42f4df72751a50548002d1 SHA1 228a5c283bef90d97d90d2dee12dd892a9f54c42 SHA256 7fb1456c8c21eab4913a522e4b79bc5c84b7373feb54614a7003b16d47dc23b8 EBUILD mummer-3.20.ebuild 1833 RMD160 b25b83b88d86fca4c523491f9a010d8bb9b03b63 SHA1 ce64dc16a22b3fae3efc27f1a6759dcb0a8329ea SHA256 d185e06ed90a8894d67155d573b15b6d8a3d629ad99415941de0ad0c4560c45b -EBUILD mummer-3.21.ebuild 1783 RMD160 fdef4aa4636be38de5a618c3000821f4b9f08619 SHA1 d854135b0c29bf9a95f055aa01385034d7914f54 SHA256 d32e9c0878340d26ff737d1ed01aa3f27f16f283a658b6ee04289f58f086d8ce -MISC ChangeLog 851 RMD160 01e4ebecfe2b12573e3b5715f1420fef7a0d1d55 SHA1 dfeed881452d043f359cdf00eaaafdb514375286 SHA256 5201c400532746532d323cf24b62b6c825061937ea747bd57f5113041fc95afb +EBUILD mummer-3.21.ebuild 1601 RMD160 ba0efe314dbce84a1a9a23d5c5f4b82a0e5df211 SHA1 af4e0bed8d702bcb49bdc05b3cc01efb349515fb SHA256 324b0e030fa90f34b849a981ad404e65cefeee4027156436f8a06538420508ac +MISC ChangeLog 933 RMD160 39b53957a48243a175241d02cc05dcf007ffe7d1 SHA1 406b4567ad440f3da5fa170f839dfa7577cbbf1e SHA256 3776d01cce1d1d444bb8cc47a5ca780d4a4699f4be393c412ed3fb4affa35b97 MISC metadata.xml 259 RMD160 d9d81b67d635fabd81aef8ae0edf971211ae9072 SHA1 8e32f751c67ff891fa35405a2cf6fb33752d6eb1 SHA256 541c3fbcf299d9a8ccf4132ee61f9e53a5d737cefdaa6fdc77764d8d4c7f3110 diff --git a/sci-biology/mummer/mummer-3.21.ebuild b/sci-biology/mummer/mummer-3.21.ebuild index 51f1cf3895b4..9038b7ca1c9f 100644 --- a/sci-biology/mummer/mummer-3.21.ebuild +++ b/sci-biology/mummer/mummer-3.21.ebuild @@ -1,13 +1,12 @@ # Copyright 1999-2009 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/mummer/mummer-3.21.ebuild,v 1.3 2009/03/09 15:55:37 weaver Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/mummer/mummer-3.21.ebuild,v 1.4 2009/03/09 19:57:28 weaver Exp $ inherit eutils -MY_P="MUMmer${PV}" DESCRIPTION="A rapid whole genome aligner" HOMEPAGE="http://mummer.sourceforge.net/" -SRC_URI="mirror://sourceforge/mummer/${MY_P}.tar.gz" +SRC_URI="mirror://sourceforge/mummer/MUMmer${PV}.tar.gz" LICENSE="Artistic" SLOT="0" @@ -17,17 +16,17 @@ KEYWORDS="~amd64 ~x86" DEPEND="" RDEPEND="app-shells/tcsh" -S="${WORKDIR}/${MY_P}" +S="${WORKDIR}/MUMmer${PV}" src_unpack() { unpack ${A} - # Warning: package uses CPPFLAGS on c in addition to cpp, despite the name + # Warning: package uses CPPFLAGS on c as well as cpp, despite the name sed -i -e 's/CPPFLAGS =/CPPFLAGS = ${CFLAGS} /' \ - -e 's/LDFLAGS =$//' "${S}/Makefile" + -e 's/LDFLAGS =$//' "${S}/Makefile" || die } src_compile() { - emake || die "emake failed" + emake || die sed -i -e 's|\($AUX_BIN_DIR = "\).*"|\1/usr/bin"|' \ -e 's|\($BIN_DIR = "\).*"|\1/usr/bin"|' \ @@ -35,18 +34,16 @@ src_compile() { -e 's|\(set bindir = \).*|\1/usr/bin|' \ -e 's|\(set scriptdir = \).*|\1/usr/share/'${PN}'/scripts|' \ -e 's|\(use lib "\).*"|\1/usr/share/'${PN}'/lib"|' \ - scripts/* exact-tandems mapview mummerplot nucmer promer run-mummer{1,3} || die "Failed to replace paths" - sed -i 's|$bindir/annotate|$bindir/mummer-annotate|' run-mummer1 scripts/run-mummer1.csh + scripts/* exact-tandems mapview mummerplot nucmer promer run-mummer{1,3} || die + mv annotate mummer-annotate || die + sed -i 's|$bindir/annotate|$bindir/mummer-annotate|' run-mummer1 scripts/run-mummer1.csh || die } src_install() { - dobin nucmer2xfig show-coords mapview show-snps run-mummer{1,3} \ - exact-tandems promer repeat-match show-aligns gaps mummer \ - show-tiling mgaps nucmer mummerplot delta-filter combineMUMs aux_bin/* || die - newbin annotate mummer-annotate || die + dobin $(find . -maxdepth 1 -type f -executable) aux_bin/* || die insinto /usr/share/${PN}/scripts - doins scripts/{*.awk,*.csh,*.pl} + doins scripts/{*.awk,*.csh,*.pl} || die insinto /usr/share/${PN}/lib doins scripts/Foundation.pm || die |