Update buildsystem for latest plplot, bug #552492

Package-Manager: portage-2.2.20/cvs/Linux x86_64
Manifest-Sign-Key: 0xE9402A79B03529A2!

9 files changed, 126 insertions, 87 deletions

diff --git a/sci-biology/embassy-domainatrix/ChangeLog b/sci-biology/embassy-domainatrix/ChangeLog
index e28526fd1b09..20d34e510e16 100644
--- a/sci-biology/embassy-domainatrix/ChangeLog
+++ b/sci-biology/embassy-domainatrix/ChangeLog
@@ -1,6 +1,10 @@
 # ChangeLog for sci-biology/embassy-domainatrix
 # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-domainatrix/ChangeLog,v 1.34 2015/03/28 17:57:09 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-domainatrix/ChangeLog,v 1.35 2015/06/21 08:46:54 jlec Exp $
+
+  21 Jun 2015; Justin Lecher <jlec@gentoo.org>
+  files/embassy-domainatrix-0.1.650_fix-build-system.patch:
+  Update buildsystem for latest plplot, bug #552492
 
   28 Mar 2015; Justin Lecher <jlec@gentoo.org>
   -embassy-domainatrix-0.1.0-r4.ebuild, embassy-domainatrix-0.1.650.ebuild:
diff --git a/sci-biology/embassy-domainatrix/Manifest b/sci-biology/embassy-domainatrix/Manifest
index d8e129ec0faa..39db7e950c53 100644
--- a/sci-biology/embassy-domainatrix/Manifest
+++ b/sci-biology/embassy-domainatrix/Manifest
@@ -1,30 +1,30 @@
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+AUX embassy-domainatrix-0.1.650_fix-build-system.patch 2860 SHA256 e44b11ca5a40404db741838ce87a68c536723bb81b3729dc1ef021c050d59b7b SHA512 9c8dfdd2e6c7f8542a989118dad6c70159c55a7f56593800b9d1896fb717b0c28ea100f5884f3284823ad1e92da6e5fe307e798028475e29d353edfe52b62865 WHIRLPOOL b02d9f774e807bca06b4a16d1438a5970c412868309333f35b39db5c067821a30a37affc9b74b44c8dcd458969f9dc1aa4ad07835b9660020bf10f26ed421fd5
 DIST EMBOSS-6.0.1.tar.gz 20204153 SHA256 3e352902aa9dab88bf486457ff23794f19398dfc6b550c4bf175dfcad34c233d
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diff --git a/sci-biology/embassy-domainatrix/files/embassy-domainatrix-0.1.650_fix-build-system.patch b/sci-biology/embassy-domainatrix/files/embassy-domainatrix-0.1.650_fix-build-system.patch
index f76b0237c7de..a932e1ebe21e 100644
--- a/sci-biology/embassy-domainatrix/files/embassy-domainatrix-0.1.650_fix-build-system.patch
+++ b/sci-biology/embassy-domainatrix/files/embassy-domainatrix-0.1.650_fix-build-system.patch
@@ -1,6 +1,12 @@
---- DOMAINATRIX-0.1.650/configure.ac
-+++ DOMAINATRIX-0.1.650/configure.ac
-@@ -635,33 +635,6 @@
+ configure.ac    | 49 +++++++------------------------------------------
+ src/Makefile.am |  6 ++----
+ 2 files changed, 9 insertions(+), 46 deletions(-)
+
+diff --git a/configure.ac b/configure.ac
+index d16cc02..d327a0d 100644
+--- a/configure.ac
++++ b/configure.ac
+@@ -635,33 +635,6 @@ AS_CASE([${host_os}],
  
  
  
@@ -34,7 +40,7 @@
  dnl FIXME: This does no longer seem required with Autoconf 2.67?
  dnl Intel MacOSX 10.6 puts X11 in a non-standard place
  dnl AS_IF([test "x${with_x}" != "xno"],
-@@ -737,21 +710,6 @@
+@@ -737,21 +710,6 @@ AX_LIB_POSTGRESQL
  
  
  
@@ -56,21 +62,25 @@
  dnl Test if --enable-localforce given
  locallink="no"
  embprefix="/usr/local"
-@@ -874,6 +832,11 @@
+@@ -874,6 +832,13 @@ AC_ARG_ENABLE([systemlibs],
  AM_CONDITIONAL([ESYSTEMLIBS], [test "x${enable_systemlibs}" = "xyes"])
  
  
 +AS_IF([test "x${enable_systemlibs}" = "xyes"],
 +[
 +dnl using system libraries
-+  PKG_CHECK_MODULES([PLPLOT], [plplotd])
++  PKG_CHECK_MODULES([PLPLOT], [plplotd],
++  [],[PKG_CHECK_MODULES([PLPLOT], [plplot])]
++  )
 +])
  
  
  # Enable the purify tool: --enable-purify, sets CC and LIBTOOL
---- DOMAINATRIX-0.1.650/src/Makefile.am
-+++ DOMAINATRIX-0.1.650/src/Makefile.am
-@@ -17,9 +17,7 @@
+diff --git a/src/Makefile.am b/src/Makefile.am
+index d405d00..54be7ca 100644
+--- a/src/Makefile.am
++++ b/src/Makefile.am
+@@ -17,9 +17,7 @@ AM_CPPFLAGS = -I../../../nucleus -I../../../ajax/pcre \
  	-I../../../ajax/ensembl -I../../../ajax/ajaxdb \
  	-I../../../ajax/acd -I../../../plplot
  else
@@ -81,11 +91,10 @@
  endif
  
  if ISSHARED
-@@ -64,5 +62,5 @@
+@@ -64,5 +62,5 @@ LDADD = ../../../nucleus/libnucleus.la ../../../ajax/acd/libacd.la \
  	$(XLIB)
  else
  LDADD = -L${embprefix}/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg \
 -        -lajax -lepcre $(NLADD) -leplplot $(XLIB)
 +        -lajax $(NLADD) $(XLIB)
  endif
-
diff --git a/sci-biology/embassy-domalign/ChangeLog b/sci-biology/embassy-domalign/ChangeLog
index a6f85a190c7a..06d2bf994c9e 100644
--- a/sci-biology/embassy-domalign/ChangeLog
+++ b/sci-biology/embassy-domalign/ChangeLog
@@ -1,6 +1,10 @@
 # ChangeLog for sci-biology/embassy-domalign
 # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-domalign/ChangeLog,v 1.26 2015/03/29 08:31:49 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-domalign/ChangeLog,v 1.27 2015/06/21 08:48:40 jlec Exp $
+
+  21 Jun 2015; Justin Lecher <jlec@gentoo.org>
+  files/embassy-domalign-0.1.650_fix-build-system.patch:
+  Update buildsystem for latest plplot, bug #552492
 
   29 Mar 2015; Justin Lecher <jlec@gentoo.org>
   -embassy-domalign-0.1.0-r4.ebuild:
diff --git a/sci-biology/embassy-domalign/Manifest b/sci-biology/embassy-domalign/Manifest
index acbbf81bf12c..129cef697351 100644
--- a/sci-biology/embassy-domalign/Manifest
+++ b/sci-biology/embassy-domalign/Manifest
@@ -1,30 +1,30 @@
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diff --git a/sci-biology/embassy-domalign/files/embassy-domalign-0.1.650_fix-build-system.patch b/sci-biology/embassy-domalign/files/embassy-domalign-0.1.650_fix-build-system.patch
index d87bae393f61..033ddf7b6535 100644
--- a/sci-biology/embassy-domalign/files/embassy-domalign-0.1.650_fix-build-system.patch
+++ b/sci-biology/embassy-domalign/files/embassy-domalign-0.1.650_fix-build-system.patch
@@ -1,6 +1,12 @@
---- DOMALIGN-0.1.650/configure.ac
-+++ DOMALIGN-0.1.650/configure.ac
-@@ -635,33 +635,6 @@
+ configure.ac    | 49 +++++++------------------------------------------
+ src/Makefile.am |  7 ++-----
+ 2 files changed, 9 insertions(+), 47 deletions(-)
+
+diff --git a/configure.ac b/configure.ac
+index 693eb4d..dc0fda9 100644
+--- a/configure.ac
++++ b/configure.ac
+@@ -635,33 +635,6 @@ AS_CASE([${host_os}],
  
  
  
@@ -34,7 +40,7 @@
  dnl FIXME: This does no longer seem required with Autoconf 2.67?
  dnl Intel MacOSX 10.6 puts X11 in a non-standard place
  dnl AS_IF([test "x${with_x}" != "xno"],
-@@ -737,21 +710,6 @@
+@@ -737,21 +710,6 @@ AX_LIB_POSTGRESQL
  
  
  
@@ -56,21 +62,25 @@
  dnl Test if --enable-localforce given
  locallink="no"
  embprefix="/usr/local"
-@@ -874,6 +832,11 @@
+@@ -874,6 +832,13 @@ AC_ARG_ENABLE([systemlibs],
  AM_CONDITIONAL([ESYSTEMLIBS], [test "x${enable_systemlibs}" = "xyes"])
  
  
 +AS_IF([test "x${enable_systemlibs}" = "xyes"],
 +[
 +dnl using system libraries
-+  PKG_CHECK_MODULES([PLPLOT], [plplotd])
++  PKG_CHECK_MODULES([PLPLOT], [plplotd],
++  [],[PKG_CHECK_MODULES([PLPLOT], [plplot])]
++  )
 +])
  
  
  # Enable the purify tool: --enable-purify, sets CC and LIBTOOL
---- DOMALIGN-0.1.650/src/Makefile.am
-+++ DOMALIGN-0.1.650/src/Makefile.am
-@@ -17,10 +17,7 @@
+diff --git a/src/Makefile.am b/src/Makefile.am
+index 8785446..fe85f11 100644
+--- a/src/Makefile.am
++++ b/src/Makefile.am
+@@ -17,10 +17,7 @@ AM_CPPFLAGS = -I../include -I../../../nucleus -I../../../ajax/pcre \
  	-I../../../ajax/ensembl -I../../../ajax/ajaxdb \
  	-I../../../ajax/acd -I../../../plplot
  else
@@ -82,11 +92,10 @@
  endif
  
  if ISSHARED
-@@ -63,5 +60,5 @@
+@@ -63,5 +60,5 @@ LDADD = ../../../nucleus/libnucleus.la ../../../ajax/acd/libacd.la \
  	../../../plplot/libeplplot.la $(XLIB)
  else
  LDADD = -L${embprefix}/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg \
 -	-lajax -lepcre $(NLADD) -leplplot $(XLIB)
 +	-lajax $(NLADD) $(XLIB)
  endif
-
diff --git a/sci-biology/embassy-domsearch/ChangeLog b/sci-biology/embassy-domsearch/ChangeLog
index 2091b5e76712..2ed7232eaaff 100644
--- a/sci-biology/embassy-domsearch/ChangeLog
+++ b/sci-biology/embassy-domsearch/ChangeLog
@@ -1,6 +1,10 @@
 # ChangeLog for sci-biology/embassy-domsearch
 # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-domsearch/ChangeLog,v 1.24 2015/03/28 17:59:24 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-domsearch/ChangeLog,v 1.25 2015/06/21 08:50:38 jlec Exp $
+
+  21 Jun 2015; Justin Lecher <jlec@gentoo.org>
+  files/embassy-domsearch-0.1.650_fix-build-system.patch:
+  Update buildsystem for latest plplot, bug #552492
 
   28 Mar 2015; Justin Lecher <jlec@gentoo.org>
   -embassy-domsearch-0.1.0-r4.ebuild, embassy-domsearch-0.1.650.ebuild:
diff --git a/sci-biology/embassy-domsearch/Manifest b/sci-biology/embassy-domsearch/Manifest
index 5e428e1f6992..7c2adee0519c 100644
--- a/sci-biology/embassy-domsearch/Manifest
+++ b/sci-biology/embassy-domsearch/Manifest
@@ -1,30 +1,30 @@
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diff --git a/sci-biology/embassy-domsearch/files/embassy-domsearch-0.1.650_fix-build-system.patch b/sci-biology/embassy-domsearch/files/embassy-domsearch-0.1.650_fix-build-system.patch
index f3f4b3950100..d24857c8386d 100644
--- a/sci-biology/embassy-domsearch/files/embassy-domsearch-0.1.650_fix-build-system.patch
+++ b/sci-biology/embassy-domsearch/files/embassy-domsearch-0.1.650_fix-build-system.patch
@@ -1,6 +1,12 @@
---- DOMSEARCH-0.1.650/configure.ac
-+++ DOMSEARCH-0.1.650/configure.ac
-@@ -635,33 +635,6 @@
+ configure.ac    | 49 +++++++------------------------------------------
+ src/Makefile.am |  6 ++----
+ 2 files changed, 9 insertions(+), 46 deletions(-)
+
+diff --git a/configure.ac b/configure.ac
+index f0f97fa..d419d7d 100644
+--- a/configure.ac
++++ b/configure.ac
+@@ -635,33 +635,6 @@ AS_CASE([${host_os}],
  
  
  
@@ -34,7 +40,7 @@
  dnl FIXME: This does no longer seem required with Autoconf 2.67?
  dnl Intel MacOSX 10.6 puts X11 in a non-standard place
  dnl AS_IF([test "x${with_x}" != "xno"],
-@@ -737,21 +710,6 @@
+@@ -737,21 +710,6 @@ AX_LIB_POSTGRESQL
  
  
  
@@ -56,21 +62,25 @@
  dnl Test if --enable-localforce given
  locallink="no"
  embprefix="/usr/local"
-@@ -874,6 +832,11 @@
+@@ -874,6 +832,13 @@ AC_ARG_ENABLE([systemlibs],
  AM_CONDITIONAL([ESYSTEMLIBS], [test "x${enable_systemlibs}" = "xyes"])
  
  
 +AS_IF([test "x${enable_systemlibs}" = "xyes"],
 +[
 +dnl using system libraries
-+  PKG_CHECK_MODULES([PLPLOT], [plplotd])
++  PKG_CHECK_MODULES([PLPLOT], [plplotd],
++  [],[PKG_CHECK_MODULES([PLPLOT], [plplot])]
++  )
 +])
  
  
  # Enable the purify tool: --enable-purify, sets CC and LIBTOOL
---- DOMSEARCH-0.1.650/src/Makefile.am
-+++ DOMSEARCH-0.1.650/src/Makefile.am
-@@ -17,9 +17,7 @@
+diff --git a/src/Makefile.am b/src/Makefile.am
+index 9829ebd..433a5c5 100644
+--- a/src/Makefile.am
++++ b/src/Makefile.am
+@@ -17,9 +17,7 @@ AM_CPPFLAGS = -I../../../nucleus -I../../../ajax/pcre \
  	-I../../../ajax/ensembl -I../../../ajax/ajaxdb \
  	-I../../../ajax/acd -I../../../plplot
  else
@@ -81,11 +91,10 @@
  endif
  
  if ISSHARED
-@@ -62,5 +60,5 @@
+@@ -62,5 +60,5 @@ LDADD = ../../../nucleus/libnucleus.la ../../../ajax/acd/libacd.la \
  	../../../plplot/libeplplot.la $(XLIB)
  else
  LDADD = -L${embprefix}/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg \
 -        -lajax -lepcre $(NLADD) -leplplot $(XLIB)
 +        -lajax $(NLADD) $(XLIB)
  endif
-