sci-biology/rebase: Version Bump

Package-Manager: portage-2.2.7/cvs/Linux x86_64
Manifest-Sign-Key: 0xB9D4F231BD1558AB!

3 files changed, 70 insertions, 7 deletions

diff --git a/sci-biology/rebase/ChangeLog b/sci-biology/rebase/ChangeLog
index 33a7616f0221..bd25b1ca92ad 100644
--- a/sci-biology/rebase/ChangeLog
+++ b/sci-biology/rebase/ChangeLog
@@ -1,6 +1,11 @@
 # ChangeLog for sci-biology/rebase
 # Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/ChangeLog,v 1.115 2013/02/28 07:50:07 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/ChangeLog,v 1.116 2013/10/08 14:15:03 jlec Exp $
+
+*rebase-1310 (08 Oct 2013)
+
+  08 Oct 2013; Justin Lecher <jlec@gentoo.org> +rebase-1310.ebuild:
+  Version Bump
 
 *rebase-1303 (28 Feb 2013)
 
diff --git a/sci-biology/rebase/Manifest b/sci-biology/rebase/Manifest
index d06d00d5fac1..a94f12ebc652 100644
--- a/sci-biology/rebase/Manifest
+++ b/sci-biology/rebase/Manifest
@@ -1,18 +1,30 @@
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-Hash: SHA256
+Hash: SHA512
 
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 DIST rebase-1202.tar.xz 25806116 SHA256 ac3dae93c43d44721a35cb97b1360500782367190750e47cd7dc9d71c2a6d851 SHA512 261e21b6bd3e0242f2936a635195414d4fda79ff8dc651a5e932b75785ffc632e9bdcee6207b3a0f0136f20197e80e7d38f3ddf52e199d56edca76a338148f4a WHIRLPOOL 1179758d2c558d16041526a495cc7732148adc0a86dd1f83a7423e0362d44c91cfb6171209fefb199ab6ed7b2bbc2743524c24b1caffdc8c14afbf8cec70318a
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+DIST rebase-1310.tar.xz 35042696 SHA256 cb8748d4bc4ad840c02769ed261960f85c200a7296cd84dfa1b8bd0c518c9e92 SHA512 9e2fd2845c115b2bd5827da2222e032b6c75af7bf321c71c8225134ff763b40ac4fb431d92186a87059848f82f96543d061d1e52f69db86b0d7d78022b51911b WHIRLPOOL e74f9a75107cbbe8a962fec89409aa7c0eada965a553f0e25b60d58de892982bca78b95dfba22a80b3e39022dd5716c48f03b75ac7ca2d3952c4c861e13f0ec6
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 EBUILD rebase-1303.ebuild 1198 SHA256 ea3f627c475dd92b1c8a0b002e32cce8ebcd3ac00935fece864673b718791fc6 SHA512 0eb35a5c5499f37e191c97c4aa597c167e8617bcd1e972a002141cac01361678e6e81d258dc7ccda489a7e53ce35ce99aaecb40501d0a4d617d04008c2d328d4 WHIRLPOOL e830ffe5a04b98c34e81bbb4d360d4ed24043ef78423d392341c8e2dcaba410ffc3a9392e3cbcc9a9b8ae1f42b8f691f667505edb54ec53fd65146b55df24852
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+EBUILD rebase-1310.ebuild 1198 SHA256 8cf37f65721ad1903b40ccfcbe887d899f875bb596fa5f18b9e189a955d1b42e SHA512 fe438e140c81f4609a7247c63baa8db0a81c7b83cf0e31fabfd517f85aa2a67a7f830c219ee36e239507601bd136bfaae7dbcd0de9020c9b399b338a5987aa24 WHIRLPOOL 3ab52ce7444a7b412a72dccbba65f4f9243630ab2de12172aaefa445051fab10aeb8e01604995f69c6c5332dd0c23efe78532d647599f761f94f737d0fa3dec8
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diff --git a/sci-biology/rebase/rebase-1310.ebuild b/sci-biology/rebase/rebase-1310.ebuild
new file mode 100644
index 000000000000..6750fcbc9126
--- /dev/null
+++ b/sci-biology/rebase/rebase-1310.ebuild
@@ -0,0 +1,46 @@
+# Copyright 1999-2013 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/rebase-1310.ebuild,v 1.1 2013/10/08 14:15:03 jlec Exp $
+
+EAPI=5
+
+MY_PV=${PV#1}
+
+DESCRIPTION="A restriction enzyme database"
+HOMEPAGE="http://rebase.neb.com"
+SRC_URI="http://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz"
+
+SLOT="0"
+LICENSE="public-domain"
+KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris ~x86-solaris"
+IUSE="emboss minimal"
+
+RDEPEND="emboss? ( >=sci-biology/emboss-5.0.0 )"
+DEPEND="${RDEPEND}"
+
+RESTRICT="binchecks strip"
+
+src_compile() {
+	if use emboss; then
+		echo; einfo "Indexing Rebase for usage with EMBOSS."
+		mkdir REBASE
+		EMBOSS_DATA="." rebaseextract -auto -infile withrefm.${MY_PV} \
+				-protofile proto.${MY_PV} -equivalences \
+				|| die "Indexing Rebase failed."
+		echo
+	fi
+}
+
+src_install() {
+	if ! use minimal; then
+		insinto /usr/share/${PN}
+		doins withrefm.${MY_PV} proto.${MY_PV}
+	fi
+	newdoc REBASE.DOC README
+	if use emboss; then
+		insinto /usr/share/EMBOSS/data/REBASE
+		doins REBASE/embossre.{enz,ref,sup}
+		insinto /usr/share/EMBOSS/data
+		doins REBASE/embossre.equ
+	fi
+}