Fix patch

Package-Manager: portage-2.2.0_alpha114/cvs/Linux x86_64

3 files changed, 11 insertions, 15 deletions

diff --git a/sci-biology/hmmer/ChangeLog b/sci-biology/hmmer/ChangeLog
index 8173cf94d04d..eee879e0d978 100644
--- a/sci-biology/hmmer/ChangeLog
+++ b/sci-biology/hmmer/ChangeLog
@@ -1,10 +1,6 @@
 # ChangeLog for sci-biology/hmmer
 # Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/hmmer/ChangeLog,v 1.34 2012/06/28 16:36:08 jlec Exp $
-
-  28 Jun 2012; Justin Lecher <jlec@gentoo.org> files/hmmer-3.0-perl-5.16.patch,
-  metadata.xml:
-  fix patch again
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/hmmer/ChangeLog,v 1.35 2012/06/28 16:38:29 jlec Exp $
 
   28 Jun 2012; Justin Lecher <jlec@gentoo.org> files/hmmer-3.0-perl-5.16.patch:
   Fix patch, screwed VCS tags, #423983
diff --git a/sci-biology/hmmer/Manifest b/sci-biology/hmmer/Manifest
index 0df3dfe3d7b4..138c0df24d6d 100644
--- a/sci-biology/hmmer/Manifest
+++ b/sci-biology/hmmer/Manifest
@@ -2,19 +2,19 @@
 Hash: SHA512
 
 AUX hmmer-3.0-fix_tests.patch 873 RMD160 a41d05e24c4b7a971be14cc9bc25b6f5d9659022 SHA1 e399425bb460c0e94ff1cabf16d0d94d3018edff SHA256 bcf31054c0b646973faa97c27c03dc80c335c43e5e07816a10a65bd596e65d44
-AUX hmmer-3.0-perl-5.16.patch 3874 RMD160 d318e7b4a6a4cc0276732cfec49a83dbdaf7f5b6 SHA1 12bf978f50c88f86a8fd0ed4d8e9a1bec7f826d8 SHA256 8f47fc9c56dad9d26c0d1ca20e4fabd70a8523ca849c82282ece3190f8a139e0
+AUX hmmer-3.0-perl-5.16.patch 3874 RMD160 3a253bea32d1d55e7c6035ebe1c29dda957b09e3 SHA1 b87b0e49f986f20d465f0a1e0a8123fdfc55ed8c SHA256 8fba737d69a5d454ef2358b036f20210e4d9b0b082ee0ac621bc12394155a3c1
 DIST hmmer-2.3.2.tar.gz 1024933 RMD160 4bf25fc71f332849c76b0a05bca24e88241cee67 SHA1 aa34cb97cbc43ff3bd92dd111ba5677298fe2d40 SHA256 d20e1779fcdff34ab4e986ea74a6c4ac5c5f01da2993b14e92c94d2f076828b4
 DIST hmmer-3.0.tar.gz 3952015 RMD160 681967fd0d2c0104ca9e080688d9652a187a8b45 SHA1 77803c0bdb3ab07b7051a4c68c0564de31940c6d SHA256 6977e6473fcb554b1d5a86dc9edffffa53918c1bd88d7fd20d7499f1ba719e83
 EBUILD hmmer-2.3.2-r1.ebuild 1167 RMD160 d886db50357d8b0dbb7f8e29bb1712d238ce96d7 SHA1 d8097ea91f630ec34745e65457441f21eea39eac SHA256 1271485785e17ec569eb0d365fba45c69b139b07cb10895915e9a5310d2ef670
 EBUILD hmmer-2.3.2-r2.ebuild 1167 RMD160 e848760e79a34acd82231ce5a53de3c6dec454dc SHA1 9f931c5ccf043dab0b0c061401cf569537094da6 SHA256 c20259de9eaf43c769a1a6b84f10da749018e10e32ae2e04e51995f0b4fd00d9
 EBUILD hmmer-3.0.ebuild 1000 RMD160 3e9197ade8b50646505aff0cd94b9e0fb30dfee0 SHA1 ac9f4797cb6c42f36730a6801f97f68b4474630d SHA256 1188a61ba4008cfa292b534088f1db6fdf996928ea722e16588f30eb42dd3882
-MISC ChangeLog 5183 RMD160 fec8ebca900365f809206dc0c281750c0caccd1c SHA1 c465f5744d2201430813563a21b70bbce691a026 SHA256 2c302129b090b4b33622d9954bbec9bca2ebfd0771f03760e4f0bf1faf7fc057
+MISC ChangeLog 5068 RMD160 89d0bb32e63be82c8e4f5f9ab01713231bf49d40 SHA1 6fd76309c78e1ad74865ef0997db9aa5755f3bf8 SHA256 e88610d34009d56a839baf8f4923c2dca4c9dc854d717d866078635e05508299
 MISC metadata.xml 280 RMD160 16affdcafcc20790497e60f2c495e9e7a4b061c9 SHA1 474537a46ec5f57c6eb76e74888a8a4784308a0f SHA256 ad90b4124fcc2ef68ba69b1afc073dc2d3178bade4286b8fb83a90df6f0e9843
 -----BEGIN PGP SIGNATURE-----
 Version: GnuPG v2.0.19 (GNU/Linux)
 Comment: GPGTools - http://gpgtools.org
 
-iEYEAREKAAYFAk/sh/4ACgkQgAnW8HDreRaILACfSEOSlDhYJ+ajvePGLvmHzdvz
-QA0AoLh2L1kOl7GW8pxLF4HU50+9cOz1
-=Wx1z
+iEYEAREKAAYFAk/siIsACgkQgAnW8HDreRYjVACdFC9q+fDTHnbiReLdENhtmucN
+7JkAn3k/DIL4LdywD2I+Bt4qMSkOuX7o
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diff --git a/sci-biology/hmmer/files/hmmer-3.0-perl-5.16.patch b/sci-biology/hmmer/files/hmmer-3.0-perl-5.16.patch
index 7bec08c2b0ba..f8afd629860f 100644
--- a/sci-biology/hmmer/files/hmmer-3.0-perl-5.16.patch
+++ b/sci-biology/hmmer/files/hmmer-3.0-perl-5.16.patch
@@ -28,7 +28,7 @@ index a4dc126..b61fa7a 100755
 +++ b/easel/devkit/esl-dependencies
 @@ -13,8 +13,8 @@
  # SRE, Mon Jun 11 11:15:31 2007
- # SVN $Id: hmmer-3.0-perl-5.16.patch,v 1.3 2012/06/28 16:36:08 jlec Exp $
+ # SVN $Id: hmmer-3.0-perl-5.16.patch,v 1.4 2012/06/28 16:38:29 jlec Exp $
  
 -require "getopts.pl"
 -&Getopts('1afr');
@@ -43,7 +43,7 @@ index af3adf6..0cdb458 100755
 +++ b/easel/devkit/sqc
 @@ -205,12 +205,11 @@
  # SRE, Tue Aug  6 11:16:39 2002
- # SVN $Id: hmmer-3.0-perl-5.16.patch,v 1.3 2012/06/28 16:36:08 jlec Exp $
+ # SVN $Id: hmmer-3.0-perl-5.16.patch,v 1.4 2012/06/28 16:38:29 jlec Exp $
  
 -require "getopts.pl";
 -require "importenv.pl";
@@ -74,7 +74,7 @@ index 9c77791..024ed34
 @@ -16,9 +16,9 @@
  #
  # SRE, Thu Mar  1 19:22:57 2007 (Janelia)
- # SVN $Id: hmmer-3.0-perl-5.16.patch,v 1.3 2012/06/28 16:36:08 jlec Exp $
+ # SVN $Id: hmmer-3.0-perl-5.16.patch,v 1.4 2012/06/28 16:38:29 jlec Exp $
 -require  "getopts.pl";
 +use Getopt::Std;
  $have_sloccount = 1;
@@ -89,7 +89,7 @@ index 757854d..a9a8902 100755
 +++ b/easel/testsuite/driver_report.pl
 @@ -25,8 +25,8 @@
  # SRE, Fri Mar  2 10:01:44 2007 (Janelia)
- # SVN $Id: hmmer-3.0-perl-5.16.patch,v 1.3 2012/06/28 16:36:08 jlec Exp $
+ # SVN $Id: hmmer-3.0-perl-5.16.patch,v 1.4 2012/06/28 16:38:29 jlec Exp $
  
 -require  "getopts.pl";
 -&Getopts('c');
@@ -107,7 +107,7 @@ index 186a392..07026a0
 @@ -10,8 +10,8 @@
  #
  # SRE, Fri Mar  2 08:37:48 2007 [Janelia]
- # SVN $Id: hmmer-3.0-perl-5.16.patch,v 1.3 2012/06/28 16:36:08 jlec Exp $
+ # SVN $Id: hmmer-3.0-perl-5.16.patch,v 1.4 2012/06/28 16:38:29 jlec Exp $
 -require  "getopts.pl";
 -&Getopts('c');
 +use Getopt::Std;