diff options
| author |   Justin Lecher <jlec@gentoo.org> | 2014-09-25 16:11:27 +0000 |
|---|---|---|
| committer | Justin Lecher <jlec@gentoo.org> | 2014-09-25 16:11:27 +0000 |
| commit | 9d70d612960d29cf1c5713b79c87150337e29018 (patch) | |
| tree | aeb51cfcb2e6c781e044f9d8614f4e67c30bbdfd /sci-biology/cufflinks | |
| parent | Bump -7.1 development version (diff) | |
| download | historical-9d70d612960d29cf1c5713b79c87150337e29018.tar.gz historical-9d70d612960d29cf1c5713b79c87150337e29018.tar.bz2 historical-9d70d612960d29cf1c5713b79c87150337e29018.zip | |
sci-biology/cufflinks: Version BUmp
Package-Manager: portage-2.2.13/cvs/Linux x86_64
Manifest-Sign-Key: 0xB9D4F231BD1558AB!
Diffstat (limited to 'sci-biology/cufflinks')
| -rw-r--r-- | sci-biology/cufflinks/ChangeLog | 7 | ||||
| -rw-r--r-- | sci-biology/cufflinks/Manifest | 32 | ||||
| -rw-r--r-- | sci-biology/cufflinks/cufflinks-2.2.1.ebuild | 39 |
3 files changed, 62 insertions, 16 deletions
diff --git a/sci-biology/cufflinks/ChangeLog b/sci-biology/cufflinks/ChangeLog index 58f03a12e14a..7a6426be6048 100644 --- a/sci-biology/cufflinks/ChangeLog +++ b/sci-biology/cufflinks/ChangeLog @@ -1,6 +1,11 @@ # ChangeLog for sci-biology/cufflinks # Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/cufflinks/ChangeLog,v 1.7 2014/09/25 15:21:35 jlec Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/cufflinks/ChangeLog,v 1.8 2014/09/25 16:11:26 jlec Exp $ + +*cufflinks-2.2.1 (25 Sep 2014) + + 25 Sep 2014; Justin Lecher <jlec@gentoo.org> +cufflinks-2.2.1.ebuild: + Version BUmp 25 Sep 2014; Justin Lecher <jlec@gentoo.org> cufflinks-1.3.0-r1.ebuild: Fix dep due to uncompatible samtools release diff --git a/sci-biology/cufflinks/Manifest b/sci-biology/cufflinks/Manifest index 298cbe04dcde..616aae46cffc 100644 --- a/sci-biology/cufflinks/Manifest +++ b/sci-biology/cufflinks/Manifest @@ -5,25 +5,27 @@ AUX cufflinks-1.3.0-autotools.patch 1270 SHA256 457741f6707097b6baa004c09995526a AUX cufflinks-1.3.0-boost.patch 52005 SHA256 4fc98a82bb1b283db0eb0b4064ac76237ddd1f5c329d76a4130ec09d7dc7983b SHA512 910c9d1b9b1635a4b3e30b0d377b1f2c192a20e482697da0346a9ecb99e0255ac50c906ff7be2d94446137ed04cfa7705c916dc892e1fc0c5c05c93e950e1d34 WHIRLPOOL a5fc395daccbf248fe819b1c21979fbd0f6168c7227d4774240fa70d58eb75dd479eb418bd181c5c470209f72d52c7913d0dea77d1b6d16716543841bd5a5984 AUX cufflinks-1.3.0-gcc-4.7.patch 594 SHA256 9dcdde0e56b3ebb3f0325eaba05b0c8f80cab311519d3785956e32bb1c4e0b97 SHA512 fc8b3924af1f24cc57e5890bb22acc1123eb1704948ded6bdf2beb7500ccbe57c12ff3905c235f3ae47dfff19e4205ed266b94a6eef48ce1539cd2c260e37ac6 WHIRLPOOL 196255a59028cadfa6d0575230bb9f602c894db437b34e1f9efb573dbe5d9bdc9bc3f9ed573166aa9fbb070d7d506a447627369bb71d72040d1ab28b358c46fc DIST cufflinks-1.3.0.tar.gz 676660 SHA256 c1e194e30e6ba2e1cbbd35e5f92be59f9fdef95a12079b3141790efbbdbdfd86 SHA512 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+inherit autotools-utils flag-o-matic toolchain-funcs + +DESCRIPTION="Transcript assembly, differential expression, and differential regulation for RNA-Seq" +HOMEPAGE="http://cufflinks.cbcb.umd.edu/" +SRC_URI="http://cufflinks.cbcb.umd.edu/downloads/${P}.tar.gz" + +SLOT="0" +LICENSE="Artistic" +IUSE="debug" +KEYWORDS="~amd64 ~x86" + +DEPEND=" + >=sci-biology/samtools-0.1.18 + <sci-biology/samtools-1 + >=dev-libs/boost-1.47.0:= + dev-cpp/eigen:3 +" +RDEPEND="${DEPEND}" + +src_prepare() { + append-cppflags $($(tc-getPKG_CONFIG) --cflags eigen3) + autotools-utils_src_prepare +} + +src_configure() { + local myeconfargs=( + --disable-optim + --with-boost-libdir="${EPREFIX}/usr/$(get_libdir)/" + --with-bam="${EPREFIX}/usr/" + $(use_enable debug) + ) + autotools-utils_src_configure +} |