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# Copyright 1999-2014 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
EAPI=5
inherit cmake-utils
DESCRIPTION="Streaming RNA-Seq Analysis"
HOMEPAGE="http://bio.math.berkeley.edu/eXpress/"
SRC_URI="http://bio.math.berkeley.edu/eXpress/downloads/express-${PV}/express-${PV}-src.tgz"
LICENSE="Artistic"
SLOT="0"
KEYWORDS="~amd64 ~x86"
DEPEND="
>=dev-libs/boost-1.52.0:=
sys-libs/zlib
sci-biology/bamtools"
RDEPEND="${DEPEND}"
S="${WORKDIR}/${P}-src"
CMAKE_USE_DIR="${S}/src"
src_prepare() {
sed \
-e 's|"${CMAKE_CURRENT_SOURCE_DIR}/../bamtools/lib/libbamtools.a"|bamtools|' \
-e '1 a find_package(Boost 1.52 COMPONENTS filesystem program_options system thread)' \
-e '1 a find_package(ZLIB)' \
-e '/add_executable/ a include_directories("/usr/include/bamtools")' \
-i src/CMakeLists.txt || die
cmake-utils_src_prepare
}
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