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|
configure.ac | 49 +++++++------------------------------------------
src/Makefile.am | 7 +++----
2 files changed, 10 insertions(+), 46 deletions(-)
diff --git a/configure.ac b/configure.ac
index f5a4ecf..bbe0743 100644
--- a/configure.ac
+++ b/configure.ac
@@ -649,33 +649,6 @@ AS_CASE([${host_os}],
-dnl PCRE library definitions - see the MAJOR and MINOR values
-dnl to see which version's configure.in these lines come from
-
-dnl Provide the current PCRE version information. Do not use numbers
-dnl with leading zeros for the minor version, as they end up in a C
-dnl macro, and may be treated as octal constants. Stick to single
-dnl digits for minor numbers less than 10. There are unlikely to be
-dnl that many releases anyway.
-
-PCRE_MAJOR="7"
-PCRE_MINOR="9"
-PCRE_DATE="11-Apr-2009"
-PCRE_VERSION="${PCRE_MAJOR}.${PCRE_MINOR}"
-
-dnl Default values for miscellaneous macros
-
-POSIX_MALLOC_THRESHOLD="-DPOSIX_MALLOC_THRESHOLD=10"
-
-dnl Provide versioning information for libtool shared libraries that
-dnl are built by default on Unix systems.
-
-PCRE_LIB_VERSION="0:1:0"
-PCRE_POSIXLIB_VERSION="0:0:0"
-
-
-
-
dnl FIXME: This does no longer seem required with Autoconf 2.67?
dnl Intel MacOSX 10.6 puts X11 in a non-standard place
dnl AS_IF([test "x${with_x}" != "xno"],
@@ -751,21 +724,6 @@ AX_LIB_POSTGRESQL
-dnl "Export" these variables for PCRE
-
-AC_SUBST([HAVE_MEMMOVE])
-AC_SUBST([HAVE_STRERROR])
-AC_SUBST([PCRE_MAJOR])
-AC_SUBST([PCRE_MINOR])
-AC_SUBST([PCRE_DATE])
-AC_SUBST([PCRE_VERSION])
-AC_SUBST([PCRE_LIB_VERSION])
-AC_SUBST([PCRE_POSIXLIB_VERSION])
-AC_SUBST([POSIX_MALLOC_THRESHOLD])
-
-
-
-
dnl Test if --enable-localforce given
locallink="no"
embprefix="/usr/local"
@@ -888,6 +846,13 @@ AC_ARG_ENABLE([systemlibs],
AM_CONDITIONAL([ESYSTEMLIBS], [test "x${enable_systemlibs}" = "xyes"])
+AS_IF([test "x${enable_systemlibs}" = "xyes"],
+[
+dnl using system libraries
+ PKG_CHECK_MODULES([PLPLOT], [plplotd],
+ [],[PKG_CHECK_MODULES([PLPLOT], [plplot])]
+ )
+])
# Enable the purify tool: --enable-purify, sets CC and LIBTOOL
diff --git a/src/Makefile.am b/src/Makefile.am
index 1f5b756..e178914 100644
--- a/src/Makefile.am
+++ b/src/Makefile.am
@@ -32,9 +32,7 @@ AM_CPPFLAGS = -I../H -I../../../nucleus -I../../../ajax/pcre \
-I../../../ajax/ensembl -I../../../ajax/ajaxdb \
-I../../../ajax/acd -I../../../plplot
else
-AM_CPPFLAGS = -I../H -I${embprefix}/include -I${embprefix}/include/eplplot \
- $(NLINCLUDES) \
- -I${embprefix}/include/epcre
+AM_CPPFLAGS = -I$(top_srcdir)/H -I${embprefix}/include $(NLINCLUDES) $(PLPLOT_CFLAGS)
endif
if ISSHARED
@@ -87,6 +85,7 @@ LINKFLAGS = $(VERS_INF)
endif
liboviennarna_la_LDFLAGS = $(LINKFLAGS)
+liboviennarna_la_LIBADD = -lajax
ovrnaalifold_SOURCES = vrnaalifold.c
ovrnaalifoldpf_SOURCES = vrnaalifoldpf.c
@@ -119,5 +118,5 @@ LDADD = liboviennarna.la \
$(XLIB)
else
LDADD = liboviennarna.la -L${embprefix}/lib -lnucleus -lacd -lajaxdb \
- -lensembl -lajaxg -lajax -lepcre $(NLADD) -leplplot $(XLIB)
+ -lensembl -lajaxg -lajax $(NLADD) $(XLIB)
endif
|
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