diff options
Diffstat (limited to 'sci-chemistry/pymol-apbs-plugin/files/pymol-apbs-plugin-2.1_p26-tcltk8.6.patch')
| -rw-r--r-- | sci-chemistry/pymol-apbs-plugin/files/pymol-apbs-plugin-2.1_p26-tcltk8.6.patch | 176 |
1 files changed, 0 insertions, 176 deletions
diff --git a/sci-chemistry/pymol-apbs-plugin/files/pymol-apbs-plugin-2.1_p26-tcltk8.6.patch b/sci-chemistry/pymol-apbs-plugin/files/pymol-apbs-plugin-2.1_p26-tcltk8.6.patch deleted file mode 100644 index c3675cf4c0d0..000000000000 --- a/sci-chemistry/pymol-apbs-plugin/files/pymol-apbs-plugin-2.1_p26-tcltk8.6.patch +++ /dev/null @@ -1,176 +0,0 @@ ---- pymol-apbs-plugin-2.1_p26.py.orig 2013-08-16 20:29:27.000000000 -0400 -+++ pymol-apbs-plugin-2.1_p26.py 2013-08-16 20:31:35.000000000 -0400 -@@ -560,7 +560,8 @@ - # Set up the Main page - page = self.notebook.add('Main') - group = Pmw.Group(page,tag_text='Main options') -- group.pack(fill = 'both', expand = 1, padx = 10, pady = 5) -+ #group.pack(fill = 'both', expand = 1, padx = 10, pady = 5) -+ group.grid(padx = 10, pady = 5, sticky=(N, S, E, W)) - self.selection = Pmw.EntryField(group.interior(), - labelpos='w', - label_text='Selection to use: ', -@@ -606,7 +607,8 @@ - page = self.notebook.add('Configuration') - - group = Pmw.Group(page,tag_text='Dielectric Constants') -- group.pack(fill = 'both', expand = 1, padx = 4, pady = 5) -+ #group.pack(fill = 'both', expand = 1, padx = 4, pady = 5) -+ group.grid(padx = 4, pady = 5, sticky=(N, S, E, W)) - group.grid(column=0, row=0) - self.interior_dielectric = Pmw.EntryField(group.interior(),labelpos='w', - label_text = 'Protein Dielectric:', -@@ -625,7 +627,8 @@ - #entry.pack(side='left',fill='both',expand=1,padx=4) # side-by-side - entry.pack(fill='x',expand=1,padx=4,pady=1) # vertical - group = Pmw.Group(page,tag_text='Other') -- group.pack(fill='both',expand=1, padx=4, pady=5) -+ #group.pack(fill='both',expand=1, padx=4, pady=5) -+ group.grid(padx=4, pady=5, sticky=(N, S, E, W)) - group.grid(column=1, row=1,columnspan=4) - self.max_mem_allowed = Pmw.EntryField(group.interior(),labelpos='w', - label_text = 'Maximum Memory Allowed (MB):', -@@ -683,7 +686,8 @@ - - - group = Pmw.Group(page,tag_text='Ions') -- group.pack(fill='both',expand=1, padx=4, pady=5) -+ #group.pack(fill='both',expand=1, padx=4, pady=5) -+ group.grid(padx=4, pady=5, sticky=(N, S, E, W)) - group.grid(column=0, row=1, ) - self.ion_plus_one_conc = Pmw.EntryField(group.interior(), - labelpos='w', -@@ -742,7 +746,8 @@ - entry.pack(fill='x',expand=1,padx=4) - - group = Pmw.Group(page,tag_text = 'Coarse Mesh Length') -- group.pack(fill = 'both', expand = 1, padx = 4, pady = 5) -+ #group.pack(fill = 'both', expand = 1, padx = 4, pady = 5) -+ group.grid(padx = 4, pady = 5, sticky=(N, S, E, W)) - group.grid(column = 1, row = 0) - for coord in 'x y z'.split(): - setattr(self,'grid_coarse_%s'%coord,Pmw.EntryField(group.interior(), -@@ -757,7 +762,8 @@ - - - group = Pmw.Group(page,tag_text = 'Fine Mesh Length') -- group.pack(fill = 'both', expand = 1, padx = 4, pady = 5) -+ #group.pack(fill = 'both', expand = 1, padx = 4, pady = 5) -+ group.grid(padx = 4, pady = 5, sticky=(N, S, E, W)) - group.grid(column = 2, row = 0) - for coord in 'x y z'.split(): - setattr(self,'grid_fine_%s'%coord,Pmw.EntryField(group.interior(), -@@ -772,7 +778,8 @@ - - - group = Pmw.Group(page,tag_text = 'Grid Center') -- group.pack(fill = 'both', expand = 1, padx = 4, pady = 5) -+ #group.pack(fill = 'both', expand = 1, padx = 4, pady = 5) -+ group.grid(padx = 4, pady = 5, sticky=(N, S, E, W)) - group.grid(column = 3, row = 0) - for coord in 'x y z'.split(): - setattr(self,'grid_center_%s'%coord,Pmw.EntryField(group.interior(), -@@ -786,7 +793,8 @@ - getattr(self,'grid_center_%s'%coord).pack(fill='x', expand=1, padx=4, pady=1) - - group = Pmw.Group(page,tag_text = 'Grid Points') -- group.pack(fill = 'both', expand = 1, padx = 4, pady = 5) -+ #group.pack(fill = 'both', expand = 1, padx = 4, pady = 5) -+ group.grid(padx = 4, pady = 5, sticky=(N, S, E, W)) - group.grid(column = 4, row = 0) - for coord in 'x y z'.split(): - setattr(self,'grid_points_%s'%coord,Pmw.EntryField(group.interior(), -@@ -804,7 +812,8 @@ - page.grid_columnconfigure(5,weight=1) - page = self.notebook.add('Program Locations') - group = Pmw.Group(page,tag_text='Locations') -- group.pack(fill = 'both', expand = 1, padx = 10, pady = 5) -+ #group.pack(fill = 'both', expand = 1, padx = 10, pady = 5) -+ group.grid(padx = 10, pady = 5, sticky=(N, S, E, W)) - def quickFileValidation(s): - if s == '': return Pmw.PARTIAL - elif os.path.isfile(s): return Pmw.OK -@@ -867,7 +876,8 @@ - - page = self.notebook.add('Temp File Locations') - group = Pmw.Group(page,tag_text='Locations') -- group.pack(fill = 'both', expand = 1, padx = 10, pady = 5) -+ #group.pack(fill = 'both', expand = 1, padx = 10, pady = 5) -+ group.grid(padx = 10, pady = 5, sticky=(N, S, E, W)) - self.pymol_generated_pqr_filename = Pmw.EntryField(group.interior(), - labelpos = 'w', - label_pyclass = FileDialogButtonClassFactory.get(self.setPymolGeneratedPqrFilename), -@@ -915,17 +925,20 @@ - page = self.notebook.add('Visualization (1)') - group = VisualizationGroup(page,tag_text='Visualization',visgroup_num=1) - self.visualization_group_1 = group -- group.pack(fill = 'both', expand = 1, padx = 10, pady = 5) -+ #group.pack(fill = 'both', expand = 1, padx = 10, pady = 5) -+ group.grid(padx = 10, pady = 5, sticky=(N, S, E, W)) - - page = self.notebook.add('Visualization (2)') - group = VisualizationGroup(page,tag_text='Visualization',visgroup_num=2) - self.visualization_group_2 = group -- group.pack(fill = 'both', expand = 1, padx = 10, pady = 5) -+ #group.pack(fill = 'both', expand = 1, padx = 10, pady = 5) -+ group.grid(padx = 10, pady = 5, sticky=(N, S, E, W)) - - # Create a couple of other empty pages - page = self.notebook.add('About') - group = Pmw.Group(page, tag_text='About PyMOL APBS Tools') -- group.pack(fill = 'both', expand = 1, padx = 10, pady = 5) -+ #group.pack(fill = 'both', expand = 1, padx = 10, pady = 5) -+ group.grid(padx = 10, pady = 5, sticky=(N, S, E, W)) - text = """This plugin integrates PyMOL (http://PyMOL.org/) with APBS (http://www.poissonboltzmann.org/apbs/). - - Documentation may be found at -@@ -2158,7 +2171,8 @@ - self.update_buttonbox = Pmw.ButtonBox(self.mm_group.interior(), padx=0) - self.update_buttonbox.pack(side=LEFT) - self.update_buttonbox.add('Update',command=self.refresh) -- self.mm_group.pack(fill = 'both', expand = 1, padx = 4, pady = 5, side=TOP) -+ #self.mm_group.pack(fill = 'both', expand = 1, padx = 4, pady = 5, side=TOP) -+ self.mm_group.grid(padx = 4, pady = 5, sticky=(N, S, E, W)) - - self.ms_group = Pmw.Group(self.interior(),tag_text='Molecular Surface') - self.ms_buttonbox = Pmw.ButtonBox(self.ms_group.interior(), padx=0) -@@ -2209,7 +2223,8 @@ - bars = (self.mol_surf_low,self.mol_surf_middle,self.mol_surf_high) - Pmw.alignlabels(bars) - for bar in bars: bar.pack(side=LEFT) -- self.ms_group.pack(fill = 'both', expand = 1, padx = 4, pady = 5, side=LEFT) -+ #self.ms_group.pack(fill = 'both', expand = 1, padx = 4, pady = 5, side=LEFT) -+ self.ms_group.grid(padx = 4, pady = 5, sticky=(N, S, E, W)) - - self.fl_group = Pmw.Group(self.interior(),tag_text='Field Lines') - self.fl_buttonbox = Pmw.ButtonBox(self.fl_group.interior(), padx=0) -@@ -2224,7 +2239,8 @@ - text = """Follows same coloring as surface.""", - ) - label.pack() -- self.fl_group.pack(fill = 'both', expand = 1, padx = 4, pady = 5, side=TOP) -+ #self.fl_group.pack(fill = 'both', expand = 1, padx = 4, pady = 5, side=TOP) -+ self.fl_group.grid(padx = 4, pady = 5, sticky=(N, S, E, W)) - - self.pi_group = Pmw.Group(self.interior(),tag_text='Positive Isosurface') - self.pi_buttonbox = Pmw.ButtonBox(self.pi_group.interior(), padx=0) -@@ -2243,7 +2259,8 @@ - entryfield_validate = {'validator' : 'real', 'min':0} - ) - self.pos_surf_val.pack(side=LEFT) -- self.pi_group.pack(fill = 'both', expand = 1, padx = 4, pady = 5, side=LEFT) -+ #self.pi_group.pack(fill = 'both', expand = 1, padx = 4, pady = 5, side=LEFT) -+ self.pi_group.grid(padx = 4, pady = 5, sticky=(N, S, E, W)) - - self.ni_group = Pmw.Group(self.interior(),tag_text='Negative Isosurface') - self.ni_buttonbox = Pmw.ButtonBox(self.ni_group.interior(), padx=0) -@@ -2262,7 +2279,8 @@ - entryfield_validate = {'validator' : 'real', 'max':0} - ) - self.neg_surf_val.pack(side=LEFT) -- self.ni_group.pack(fill = 'both', expand = 1, padx = 4, pady = 5, side=LEFT) -+ #self.ni_group.pack(fill = 'both', expand = 1, padx = 4, pady = 5, side=LEFT) -+ self.ni_group.grid(padx = 4, pady = 5, sticky=(N, S, E, W)) - - - |