diff options
Diffstat (limited to 'sci-biology/allpathslg/files/allpathslg-52488-gcc7.patch')
| -rw-r--r-- | sci-biology/allpathslg/files/allpathslg-52488-gcc7.patch | 13 |
1 files changed, 13 insertions, 0 deletions
diff --git a/sci-biology/allpathslg/files/allpathslg-52488-gcc7.patch b/sci-biology/allpathslg/files/allpathslg-52488-gcc7.patch new file mode 100644 index 000000000000..7c5e1267e4e9 --- /dev/null +++ b/sci-biology/allpathslg/files/allpathslg-52488-gcc7.patch @@ -0,0 +1,13 @@ +--- a/src/paths/long/VariantCallTools.cc ++++ b/src/paths/long/VariantCallTools.cc +@@ -1870,8 +1870,8 @@ + bool i_is_indel = (change[i].first.size() != change[i].second.size()); + if (i_is_indel) inserted_base += change[i].second.size()-1; + size_t j = i + 1; +- while (j < edits.size() && abs(edits[j].second - edits[j-1].second +- - change[j-1].first.size()) < MinClumpSep) { ++ while (j < edits.size() && std::abs(edits[j].second - edits[j-1].second ++ - static_cast<int>(change[j-1].first.size())) < MinClumpSep) { + nmatch += edits[j].second - edits[j-1].second - change[j-1].first.size(); + bool j_is_indel = (change[j].first.size() != change[j].second.size()); + if (j_is_indel) |