sci-libs/tensorflow: bump 1.13.1

Closes: https://bugs.gentoo.org/682000
Closes: https://bugs.gentoo.org/678920
Signed-off-by: Jason Zaman <perfinion@gentoo.org>
Package-Manager: Portage-2.3.62, Repoman-2.3.11

3 files changed, 327 insertions, 1 deletions

diff --git a/sci-libs/tensorflow/Manifest b/sci-libs/tensorflow/Manifest
index 5f40d24cfc92..edb1878c323c 100644
--- a/sci-libs/tensorflow/Manifest
+++ b/sci-libs/tensorflow/Manifest
@@ -34,6 +34,7 @@ DIST tensorflow-1.11.0.tar.gz 25024790 BLAKE2B 74129fb1e6db0317fd45266dae7aa4fab
 DIST tensorflow-1.12.0.tar.gz 26341737 BLAKE2B 6b9e21a9367ec7454916af327ae21fc6c46e54885f30823784985a61193654fd1942cbd3b5688f55cbd63f890417eac812d0cdb576d0f0b8677df92c259837c0 SHA512 b145a9118856aa00a829ab6af89bff4e1e131371c96d77b07532544112803c4574d97ef224b28a64437a2af8db4286786dc0b4123efe110b2aa734b443a7e238
 DIST tensorflow-1.13.0_rc0.tar.gz 31616223 BLAKE2B b4cb76cdb0e79639e8a1282835101d8a5e23a0e9d659dfbc01d8395528d05c434d0cc93df010086acbc338590d8ced3d95b4b00d6e1a7ebbe8d1df1f87265114 SHA512 0d8f88a8882ae1f69eee82fd54a836b3a0629c6a274af8ef329421445aeb446b651b90285c3ea19cb768860fd759e715dea481d5a07ec722ebd34323331e61dd
 DIST tensorflow-1.13.0_rc2.tar.gz 31616906 BLAKE2B 94e6ba8a56cad25e1c90950c75129d77bd6351dcd4e87721efb41cd560835ca7212d1f1a932c54c2f328756f92afe1fe299c48e9b520aea74bbb3b0928b0c356 SHA512 a0b5c961f56530cf5245d4f2f0d51642829dd348b811315eff533dae9f77d38e99f03ec0d61c40a20237758916a7173f4baf99a474717c1aefc111614f9171e0
+DIST tensorflow-1.13.1.tar.gz 31614228 BLAKE2B 3e78309744747afd5a0929eebccb414efe51320f9291424ef6e3cb848f265aaac5ff16a7064c7aac8094f06b1edb61aa9fe22a55c28c23cfc4e2a6f640f4f12d SHA512 1e5c020a82b0b502c9c6fc9439905e19e8f1fb07e32740a5e2c70f4a3565c8c87053ccdcad360e95550dad648154e399ca8e352fb97a1788acfec3b87bf323bb
 DIST tensorflow-patches-1.10.0.tar.bz2 4032 BLAKE2B 8588deec74179d8044af631de8e651491cc713553ee15ece9dff5052bd95b10924bdbe4301453f00d0f2fccd5d595d496b48fe45b0259837653b2de9e1898ab9 SHA512 1f57995ca9b3278735636cc42c88dc45558fa6a1d656108293f8df3fd9961d75f5e979bf0a9909136134e1cdaab41a34f83e605b48b23dddf17a6b1be684117b
 DIST tensorflow-patches-1.11.0.tar.bz2 11013 BLAKE2B 929cb9fee5e6b63f00341351908d3050c676670d9cc2c1241bd2e3c86601704a7495ab598b992718f0b51fc369e33e7c646bc5db3ba3b86b18326b1c2d2974a8 SHA512 76a94c9444e1d984afaf080222d430032636204d05a5e3ff5530012dfa1eba78619dd2a2942343ccc2f7fc489eb8c6f51fddd0b84cb2c2db645b2b914cc61f80
 DIST tensorflow-patches-1.12.0.tar.bz2 10638 BLAKE2B fc2c30f6b425390f5791df8ec409165aa4cc242eb93885845cc34e8302f781b267efaebf9e996f0cbc7558d975d742fb2e5509df9f06d85a370ea73795f92c49 SHA512 2b734e206eda58c898ad7090b3fe371b08c06dcb52d07fc0991548cec7e45c2500e797dd7b98b8a3a4416b85c8886314bd75921d0cd6d942a7cd15688954dd5d
diff --git a/sci-libs/tensorflow/metadata.xml b/sci-libs/tensorflow/metadata.xml
index 1dca7af5e0f3..fd7eed034544 100644
--- a/sci-libs/tensorflow/metadata.xml
+++ b/sci-libs/tensorflow/metadata.xml
@@ -10,7 +10,6 @@
 	</longdescription>
 	<use>
 		<flag name="cuda">Enable support for nVidia CUDA</flag>
-		<flag name="mpi">Enable support for MPI</flag>
 		<flag name="system-libs">Link with system instead of bundled libraries</flag>
 	</use>
 	<upstream>
diff --git a/sci-libs/tensorflow/tensorflow-1.13.1.ebuild b/sci-libs/tensorflow/tensorflow-1.13.1.ebuild
new file mode 100644
index 000000000000..22f3f9300fad
--- /dev/null
+++ b/sci-libs/tensorflow/tensorflow-1.13.1.ebuild
@@ -0,0 +1,326 @@
+# Copyright 1999-2019 Jason Zaman
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+
+DISTUTILS_OPTIONAL=1
+PYTHON_COMPAT=( python2_7 python{3_5,3_6,3_7} )
+MY_PV=${PV/_rc/-rc}
+MY_P=${PN}-${MY_PV}
+
+inherit bazel check-reqs cuda distutils-r1 flag-o-matic toolchain-funcs
+
+DESCRIPTION="Computation framework using data flow graphs for scalable machine learning"
+HOMEPAGE="https://www.tensorflow.org/"
+
+LICENSE="Apache-2.0"
+SLOT="0"
+KEYWORDS="~amd64"
+IUSE="cuda mpi +python"
+CPU_USE_FLAGS_X86="sse sse2 sse3 sse4_1 sse4_2 avx avx2 fma3 fma4"
+for i in $CPU_USE_FLAGS_X86; do
+	IUSE+=" cpu_flags_x86_$i"
+done
+
+# distfiles that bazel uses for the workspace, will be copied to basel-distdir
+bazel_external_uris="
+	http://www.kurims.kyoto-u.ac.jp/~ooura/fft.tgz -> oourafft-20061228.tgz
+	https://bitbucket.org/eigen/eigen/get/9f48e814419e.tar.gz -> eigen-9f48e814419e.tar.gz
+	https://github.com/abseil/abseil-cpp/archive/389ec3f906f018661a5308458d623d01f96d7b23.tar.gz -> abseil-cpp-389ec3f906f018661a5308458d623d01f96d7b23.tar.gz
+	https://github.com/bazelbuild/rules_closure/archive/dbb96841cc0a5fb2664c37822803b06dab20c7d1.tar.gz -> bazelbuild-rules_closure-dbb96841cc0a5fb2664c37822803b06dab20c7d1.tar.gz
+	https://github.com/bazelbuild/rules_docker/archive/a9bb1dab84cdf46e34d1b34b53a17bda129b5eba.tar.gz -> rules_docker-a9bb1dab84cdf46e34d1b34b53a17bda129b5eba.tar.gz
+	https://github.com/google/double-conversion/archive/3992066a95b823efc8ccc1baf82a1cfc73f6e9b8.zip -> double-conversion-3992066a95b823efc8ccc1baf82a1cfc73f6e9b8.zip
+	https://github.com/google/farmhash/archive/816a4ae622e964763ca0862d9dbd19324a1eaf45.tar.gz -> farmhash-816a4ae622e964763ca0862d9dbd19324a1eaf45.tar.gz
+	https://github.com/google/gemmlowp/archive/38ebac7b059e84692f53e5938f97a9943c120d98.zip -> gemmlowp-38ebac7b059e84692f53e5938f97a9943c120d98.zip
+	https://github.com/google/highwayhash/archive/fd3d9af80465e4383162e4a7c5e2f406e82dd968.tar.gz -> highwayhash-fd3d9af80465e4383162e4a7c5e2f406e82dd968.tar.gz
+	https://github.com/nlopezgi/bazel-toolchains/archive/3f8c58fe530fedc446de04673bc1e32985887dea.tar.gz -> bazel-toolchains-3f8c58fe530fedc446de04673bc1e32985887dea.tar.gz
+	cuda? (
+		https://github.com/nvidia/nccl/archive/f93fe9bfd94884cec2ba711897222e0df5569a53.tar.gz -> nvidia-nccl-f93fe9bfd94884cec2ba711897222e0df5569a53.tar.gz
+		https://github.com/NVlabs/cub/archive/1.8.0.zip -> cub-1.8.0.zip
+	)
+	python? (
+		https://github.com/intel/ARM_NEON_2_x86_SSE/archive/1200fe90bb174a6224a525ee60148671a786a71f.tar.gz -> ARM_NEON_2_x86_SSE-1200fe90bb174a6224a525ee60148671a786a71f.tar.gz
+		https://mirror.bazel.build/docs.python.org/2.7/_sources/license.rst.txt -> tensorflow-python-license.rst.txt
+		https://pypi.python.org/packages/bc/cc/3cdb0a02e7e96f6c70bd971bc8a90b8463fda83e264fa9c5c1c98ceabd81/backports.weakref-1.0rc1.tar.gz
+	)"
+
+SRC_URI="https://github.com/${PN}/${PN}/archive/v${MY_PV}.tar.gz -> ${P}.tar.gz
+		${bazel_external_uris}"
+
+# cuda-10.1 / cudnn 7.5 is not supported yet
+RDEPEND="
+	app-arch/snappy
+	dev-db/lmdb
+	dev-db/sqlite
+	dev-libs/icu
+	>=dev-libs/jsoncpp-1.8.4
+	dev-libs/libpcre
+	dev-libs/nsync
+	dev-libs/openssl:0=
+	>=dev-libs/protobuf-3.6.0
+	>=dev-libs/re2-0.2018.04.01
+	media-libs/giflib
+	media-libs/libjpeg-turbo
+	media-libs/libpng:0
+	>=net-libs/grpc-1.16.0
+	net-misc/curl
+	sys-libs/zlib
+	cuda? (
+		|| (
+			( =dev-util/nvidia-cuda-toolkit-10.0*[profiler] =dev-libs/cudnn-7.4* )
+			( =dev-util/nvidia-cuda-toolkit-9.2*[profiler] =dev-libs/cudnn-7.1* )
+			( =dev-util/nvidia-cuda-toolkit-9.1*[profiler] =dev-libs/cudnn-7.0* )
+		)
+	)
+	mpi? ( virtual/mpi )
+	python? (
+		${PYTHON_DEPS}
+		>=dev-libs/flatbuffers-1.8.0
+		dev-python/absl-py[${PYTHON_USEDEP}]
+		>=dev-python/astor-0.7.1[${PYTHON_USEDEP}]
+		dev-python/gast[${PYTHON_USEDEP}]
+		dev-python/numpy[${PYTHON_USEDEP}]
+		dev-python/google-pasta[${PYTHON_USEDEP}]
+		>=dev-python/protobuf-python-3.6.0[${PYTHON_USEDEP}]
+		dev-python/six[${PYTHON_USEDEP}]
+		dev-python/termcolor[${PYTHON_USEDEP}]
+		dev-python/grpcio[${PYTHON_USEDEP}]
+		net-libs/google-cloud-cpp
+		>=sci-libs/keras-applications-1.0.6[${PYTHON_USEDEP}]
+		>=sci-libs/keras-preprocessing-1.0.5[${PYTHON_USEDEP}]
+		>=sci-visualization/tensorboard-1.13.0[${PYTHON_USEDEP}]
+		virtual/python-enum34[${PYTHON_USEDEP}]
+	)"
+DEPEND="${RDEPEND}
+	dev-python/mock"
+PDEPEND="python? (
+		>=sci-libs/tensorflow-estimator-1.13.0[${PYTHON_USEDEP}]
+	)"
+BDEPEND="
+	app-arch/unzip
+	>=dev-libs/protobuf-3.6.0
+	dev-java/java-config
+	dev-python/mock
+	dev-lang/swig
+	dev-python/cython
+	cuda? (
+		>=dev-util/nvidia-cuda-toolkit-8.0[profiler]
+	)
+	!python? ( dev-lang/python )
+	python? (
+		dev-python/grpcio-tools
+	)"
+REQUIRED_USE="python? ( ${PYTHON_REQUIRED_USE} )"
+
+S="${WORKDIR}/${MY_P}"
+
+DOCS=( AUTHORS CONTRIBUTING.md ISSUE_TEMPLATE.md README.md RELEASE.md )
+CHECKREQS_MEMORY="5G"
+CHECKREQS_DISK_BUILD="5G"
+
+get-cpu-flags() {
+	local i f=()
+	# Keep this list in sync with tensorflow/core/platform/cpu_feature_guard.cc.
+	for i in sse sse2 sse3 sse4_1 sse4_2 avx avx2 fma4; do
+		use cpu_flags_x86_${i} && f+=( -m${i/_/.} )
+	done
+	use cpu_flags_x86_fma3 && f+=( -mfma )
+	echo "${f[*]}"
+}
+
+pkg_setup() {
+	local num_pythons_enabled
+	num_pythons_enabled=0
+	count_impls(){
+		num_pythons_enabled=$((${num_pythons_enabled} + 1))
+	}
+	use python && python_foreach_impl count_impls
+
+	# 5 G to build C/C++ libs, 5G per python impl
+	CHECKREQS_DISK_BUILD="$((5 + 5 * $num_pythons_enabled))G"
+	check-reqs_pkg_setup
+}
+
+src_unpack() {
+	# Only unpack the main distfile
+	unpack "${P}.tar.gz"
+	bazel_load_distfiles "${bazel_external_uris}"
+}
+
+src_prepare() {
+	export JAVA_HOME=$(java-config --jre-home) # so keepwork works
+
+	append-flags $(get-cpu-flags)
+	bazel_setup_bazelrc
+
+	default
+	use python && python_copy_sources
+
+	use cuda && cuda_add_sandbox
+}
+
+src_configure() {
+	export JAVA_HOME=$(java-config --jre-home) # so keepwork works
+
+	do_configure() {
+		export CC_OPT_FLAGS=" "
+		export TF_ENABLE_XLA=0
+		export TF_NEED_OPENCL_SYCL=0
+		export TF_NEED_OPENCL=0
+		export TF_NEED_COMPUTECPP=0
+		export TF_NEED_ROCM=0
+		export TF_NEED_MPI=$(usex mpi 1 0)
+		export TF_SET_ANDROID_WORKSPACE=0
+
+		if use python; then
+			python_export PYTHON_SITEDIR
+			export PYTHON_BIN_PATH="${PYTHON}"
+			export PYTHON_LIB_PATH="${PYTHON_SITEDIR}"
+		else
+			export PYTHON_BIN_PATH="$(which python)"
+			export PYTHON_LIB_PATH="$(python -c 'from distutils.sysconfig import *; print(get_python_lib())')"
+		fi
+
+		export TF_NEED_CUDA=$(usex cuda 1 0)
+		export TF_DOWNLOAD_CLANG=0
+		export TF_CUDA_CLANG=0
+		export TF_NEED_TENSORRT=0
+		if use cuda; then
+			export CUDA_TOOLKIT_PATH="${EPREFIX%/}/opt/cuda"
+			export CUDNN_INSTALL_PATH="${EPREFIX%/}/opt/cuda"
+			export GCC_HOST_COMPILER_PATH="$(cuda_gccdir)/$(tc-getCC)"
+			export TF_NCCL_VERSION="1"
+			export TF_CUDA_VERSION="$(cuda_toolkit_version)"
+			export TF_CUDNN_VERSION="$(cuda_cudnn_version)"
+			einfo "Setting CUDA version: $TF_CUDA_VERSION"
+			einfo "Setting CUDNN version: $TF_CUDNN_VERSION"
+		fi
+
+		local SYSLIBS=(
+			absl_py
+			astor_archive
+			boringssl
+			com_github_googleapis_googleapis
+			com_github_googlecloudplatform_google_cloud_cpp
+			com_google_protobuf
+			com_google_protobuf_cc
+			com_googlesource_code_re2
+			curl
+			cython
+			flatbuffers
+			gast_archive
+			gif_archive
+			grpc
+			icu
+			jpeg
+			jsoncpp_git
+			keras_applications_archive
+			lmdb
+			nasm
+			nsync
+			org_sqlite
+			pcre
+			png_archive
+			protobuf_archive
+			six_archive
+			snappy
+			swig
+			termcolor_archive
+			zlib_archive
+		)
+
+		export TF_SYSTEM_LIBS="${SYSLIBS[@]}"
+		export TF_IGNORE_MAX_BAZEL_VERSION=1
+
+		# This is not autoconf
+		./configure || die
+
+		echo 'build --config=noaws --config=nohdfs --config=noignite --config=nokafka' >> .bazelrc || die
+	}
+	if use python; then
+		python_foreach_impl run_in_build_dir do_configure
+	else
+		do_configure
+	fi
+}
+
+src_compile() {
+	export JAVA_HOME=$(java-config --jre-home) # so keepwork works
+
+	if use python; then
+		python_setup
+		BUILD_DIR="${S}-${EPYTHON/./_}"
+		cd "${BUILD_DIR}"
+	fi
+
+	# fail early if any deps are missing
+	ebazel build --nobuild \
+		//tensorflow:libtensorflow_framework.so \
+		//tensorflow:libtensorflow.so \
+		//tensorflow:libtensorflow_cc.so \
+		$(usex python '//tensorflow/tools/pip_package:build_pip_package' '')
+
+	ebazel build \
+		//tensorflow:libtensorflow_framework.so \
+		//tensorflow:libtensorflow.so
+	ebazel build //tensorflow:libtensorflow_cc.so
+
+	do_compile() {
+		ebazel build //tensorflow/tools/pip_package:build_pip_package
+	}
+	BUILD_DIR="${S}"
+	cd "${BUILD_DIR}"
+	use python && python_foreach_impl run_in_build_dir do_compile
+	ebazel shutdown
+}
+
+src_install() {
+	local i j
+	export JAVA_HOME=$(java-config --jre-home) # so keepwork works
+
+	do_install() {
+		einfo "Installing ${EPYTHON} files"
+		local srcdir="${T}/src-${MULTIBUILD_VARIANT}"
+		mkdir -p "${srcdir}" || die
+		bazel-bin/tensorflow/tools/pip_package/build_pip_package --src "${srcdir}" || die
+		cd "${srcdir}" || die
+		esetup.py install
+
+		# libtensorflow_framework.so is in /usr/lib already
+		python_export PYTHON_SITEDIR PYTHON_SCRIPTDIR
+		rm -f "${D}/${PYTHON_SITEDIR}/${PN}/lib${PN}_framework.so" || die
+		python_optimize
+	}
+
+	if use python; then
+		python_foreach_impl run_in_build_dir do_install
+
+		# Symlink to python-exec scripts
+		for i in "${ED}"/usr/lib/python-exec/*/*; do
+			n="${i##*/}"
+			[[ -e "${ED}/usr/bin/${n}" ]] || dosym ../lib/python-exec/python-exec2 "/usr/bin/${n}"
+		done
+
+		python_setup
+		local BUILD_DIR="${S}-${EPYTHON/./_}"
+		cd "${BUILD_DIR}" || die
+	fi
+
+	einfo "Installing headers"
+	ebazel build //tensorflow:install_headers
+	ebazel shutdown
+	insinto /usr/include/${PN}/
+	doins -r bazel-genfiles/tensorflow/include/*
+
+	einfo "Installing libs"
+	# Generate pkg-config file
+	${PN}/c/generate-pc.sh --prefix="${EPREFIX}"/usr --libdir=$(get_libdir) --version=${MY_PV} || die
+	insinto /usr/$(get_libdir)/pkgconfig
+	doins ${PN}.pc
+
+	dolib.so bazel-bin/tensorflow/lib${PN}_framework.so
+	dolib.so bazel-bin/tensorflow/lib${PN}.so
+	dolib.so bazel-bin/tensorflow/lib${PN}_cc.so
+
+	einstalldocs
+}