proj/gentoo: Initial commit

This commit represents a new era for Gentoo:
Storing the gentoo-x86 tree in Git, as converted from CVS.

This commit is the start of the NEW history.
Any historical data is intended to be grafted onto this point.

Creation process:
1. Take final CVS checkout snapshot
2. Remove ALL ChangeLog* files
3. Transform all Manifests to thin
4. Remove empty Manifests
5. Convert all stale $Header$/$Id$ CVS keywords to non-expanded Git $Id$
5.1. Do not touch files with -kb/-ko keyword flags.

Signed-off-by: Robin H. Johnson <robbat2@gentoo.org>
X-Thanks: Alec Warner <antarus@gentoo.org> - did the GSoC 2006 migration tests
X-Thanks: Robin H. Johnson <robbat2@gentoo.org> - infra guy, herding this project
X-Thanks: Nguyen Thai Ngoc Duy <pclouds@gentoo.org> - Former Gentoo developer, wrote Git features for the migration
X-Thanks: Brian Harring <ferringb@gentoo.org> - wrote much python to improve cvs2svn
X-Thanks: Rich Freeman <rich0@gentoo.org> - validation scripts
X-Thanks: Patrick Lauer <patrick@gentoo.org> - Gentoo dev, running new 2014 work in migration
X-Thanks: Michał Górny <mgorny@gentoo.org> - scripts, QA, nagging
X-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed

3 files changed, 69 insertions, 0 deletions

diff --git a/sci-chemistry/pymol-plugins-promol/Manifest b/sci-chemistry/pymol-plugins-promol/Manifest
new file mode 100644
index 000000000000..30b2014c9f2f
--- /dev/null
+++ b/sci-chemistry/pymol-plugins-promol/Manifest
@@ -0,0 +1 @@
+DIST pymol-plugins-promol-3.0.2.zip 2219295 SHA256 4281131ab5fc5568c1e3984aec4a7022b515334c66adfbc2682df5f0e6a4c2d6 SHA512 e40e9c08e2cb1b223390d751bb1f32069924f1c23aa2b4bdafb6689254e6aa673d4412aca587792f660869f97a389db8a9183033d8b2394c998d0f911104d8d7 WHIRLPOOL 83a3122aaa60b3d81ca8f19dcc4c8bce32190861893c712e517d48053d65009ff001b7bb1bb89b7bbd2504f1cea38999655ddd164defcba0231e805a5c590728
diff --git a/sci-chemistry/pymol-plugins-promol/metadata.xml b/sci-chemistry/pymol-plugins-promol/metadata.xml
new file mode 100644
index 000000000000..4a00a64b40ae
--- /dev/null
+++ b/sci-chemistry/pymol-plugins-promol/metadata.xml
@@ -0,0 +1,7 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+  <maintainer>
+    <email>jlec@gentoo.org</email>
+  </maintainer>
+</pkgmetadata>
diff --git a/sci-chemistry/pymol-plugins-promol/pymol-plugins-promol-3.0.2-r1.ebuild b/sci-chemistry/pymol-plugins-promol/pymol-plugins-promol-3.0.2-r1.ebuild
new file mode 100644
index 000000000000..e2d6430c01e1
--- /dev/null
+++ b/sci-chemistry/pymol-plugins-promol/pymol-plugins-promol-3.0.2-r1.ebuild
@@ -0,0 +1,61 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=5
+
+PYTHON_COMPAT=( python2_7 )
+
+inherit python-r1
+
+DESCRIPTION="Fast and accurate regognition of active sites"
+HOMEPAGE="http://www.rit.edu/cos/ezviz/ProMOL_dl.html"
+SRC_URI="http://www.rit.edu/cos/ezviz/ProMOL.zip -> ${P}.zip"
+
+SLOT="0"
+KEYWORDS="~amd64 ~x86 ~amd64-linux"
+LICENSE="all-rights-reserved"
+IUSE=""
+
+RESTRICT="mirror bindist"
+
+REQUIRED_USE="${PYTHON_REQUIRED_USE}"
+
+RDEPEND="
+	${PYTHON_DEPS}
+	virtual/pmw[${PYTHON_USEDEP}]
+	sci-chemistry/pymol[${PYTHON_USEDEP}]"
+DEPEND=""
+
+S="${WORKDIR}/ProMOL Folder"
+
+src_prepare() {
+	python_copy_sources
+	preparation() {
+		cd "${BUILD_DIR}" || die
+		sed \
+			-e "s:./modules/pmg_tk/startup:${EPREFIX}/$(python_get_sitedir)/pmg_tk/startup/ProMol:g" \
+			-i ProMOL_302.py || die
+	}
+	python_foreach_impl preparation
+}
+
+src_install(){
+	dodoc *doc
+	dohtml -r Thanks.html EDMHelp.htm Help
+
+	installation() {
+		cd "${BUILD_DIR}" || die
+		python_moduleinto pmg_tk/startup/ProMol
+		python_domodule PDB_List AminoPics Motifs *GIF pdb_entry_type.txt Master.txt Scripts
+		python_moduleinto pmg_tk/startup
+		python_domodule *.py
+		dosym ../../../../../../share/doc/${PF}/html/Help \
+			$(python_get_sitedir)/pmg_tk/startup/ProMol/Help
+		dosym ../../../../../../share/doc/${PF}/html/Thanks.html \
+			$(python_get_sitedir)/pmg_tk/startup/ProMol/Thanks.html
+		dosym ../../../../../../share/doc/${PF}/html/EDMHelp.htm \
+			$(python_get_sitedir)/pmg_tk/startup/ProMol/EDMHelp.htm
+	}
+	python_foreach_impl installation
+}