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# Copyright 1999-2022 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=8
inherit cmake toolchain-funcs
DESCRIPTION="VCF/BED utils, Genotype Phenotype Association Toolkit (GPAT++)"
HOMEPAGE="https://github.com/vcflib/vcflib"
SRC_URI="https://github.com/vcflib/vcflib/archive/refs/tags/v${PV}.tar.gz -> ${P}.tar.gz"
LICENSE="MIT-with-advertising"
SLOT="0"
# No proper release tarball for this release yet
KEYWORDS=""
IUSE="openmp"
DEPEND="
sys-libs/zlib
sci-libs/htslib
sci-biology/tabixpp
"
RDEPEND="${DEPEND}"
src_prepare(){
cmake_src_prepare
sed -e "s/^CXX = g++/CXX = $(tc-getCXX)/" -i Makefile || die
sed -e "s/^CXXFLAGS = -O3/CXXFLAGS = ${CXXFLAGS}/" -i Makefile || die
# openmp detection stolen from velvet-1.2.10.ebuild
if use openmp; then
if [[ $(tc-getCXX) =~ g++ ]]; then
local eopenmp=-fopenmp
elif [[ $(tc-getCXX) =~ cxx ]]; then
local eopenmp=-openmp
sed -e "s/-fopenmp/${eopenmp}/" -i Makefile || die
else
elog "Cannot detect compiler type so not setting openmp support"
fi
fi
}
src_compile(){
mycmakeargs=(
-DOPENMP="$(use_enable openmp)"
-DHTSLIB_LOCAL=ON
)
cmake_src_compile
}
#
# src_install(){
# dobin bin/*
# dolib lib/* # install libvcflib.a
# dodoc README.md
# }
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