diff options
| author |   Martin Mokrejš <mmokrejs@fold.natur.cuni.cz> | 2015-04-30 12:10:36 +0200 |
|---|---|---|
| committer | Martin Mokrejš <mmokrejs@fold.natur.cuni.cz> | 2015-04-30 12:10:36 +0200 |
| commit | 50d3d1d5b5c59652a2348b4105490cc698125b89 (patch) | |
| tree | 10d122a103559d56fe6d4155a494d426a678872b /sci-biology/jellyfish | |
| parent | sci-biology/trinityrnaseq: new package (with last release on sourceforge) (diff) | |
| download | sci-50d3d1d5b5c59652a2348b4105490cc698125b89.tar.gz sci-50d3d1d5b5c59652a2348b4105490cc698125b89.tar.bz2 sci-50d3d1d5b5c59652a2348b4105490cc698125b89.zip | |
sci-biology/jellyfish: version bump; ebuild cleanup
Package-Manager: portage-2.2.18
Diffstat (limited to 'sci-biology/jellyfish')
| -rw-r--r-- | sci-biology/jellyfish/Manifest | 1 | ||||
| -rw-r--r-- | sci-biology/jellyfish/jellyfish-2.1.3.ebuild | 4 | ||||
| -rw-r--r-- | sci-biology/jellyfish/jellyfish-2.1.4.ebuild | 28 |
3 files changed, 31 insertions, 2 deletions
diff --git a/sci-biology/jellyfish/Manifest b/sci-biology/jellyfish/Manifest index b5035d2e6..f3f3e9e4a 100644 --- a/sci-biology/jellyfish/Manifest +++ b/sci-biology/jellyfish/Manifest @@ -1,2 +1,3 @@ DIST JellyfishUserGuide.pdf 142367 SHA256 6f4365f1839b0370fff50fcd25ffcf2dad4192c2ff5b8540fd929d73a8cf85c3 SHA512 a9d65be7591d4b9b275b9f76ab79806d31bf7ef36b297b67b1802a302687aa8d49d4c491c3bb9201aec58268bcfc8c703940c72991b9080bbd1bde95bbda5b8a WHIRLPOOL 1c57b1596ccfff2159bb86359f9dafac1f994b33ab38dc334827d74b8c7541728c6c8b400df54d756bfa0b98ae023fae020ccbebbb24e3eb51baccac5024a6e6 DIST jellyfish-2.1.3.tar.gz 955773 SHA256 00530abd01c1253646f29fa4554e96fd31148ed92402940e6f357bd5cab38e9b SHA512 2b6fea6c2686de7b568988543d5a9466676eb17252ecce3243b0dc7e3c833aed02ae6570749df58c2921289db0167b39848ccd80eb3cc568cdbaa0045114b702 WHIRLPOOL 4a1e6568932db0cc4773e89e4b8f049e96ed929723ffd518ce7e0ed12bd29041d0774fba1069251a336e448dd75703a350917ffc3db5a35f2cfac828572da566 +DIST jellyfish-2.1.4.tar.gz 958038 SHA256 c4e692170d33efa9e6e4f0b134d8e257fb802832af17fdc53ac468bf8f0f29a5 SHA512 28bbaf6ed5c69caec24a09ceb2dfa99b160f3a9c2764d3f30ab205374a6f17dfc5c6d7405e75fd5161882350db160442a91568dd65ea9851e8cb74eb71f25742 WHIRLPOOL c588f4642ff0474e0565f63d2c17db03b90fa302dff9c678766e589142bc9f71a0b48e2088b24b2df15955cae85ab43aaa1ae79066113a144c8ee8bfa75594f3 diff --git a/sci-biology/jellyfish/jellyfish-2.1.3.ebuild b/sci-biology/jellyfish/jellyfish-2.1.3.ebuild index c217e42e2..0d45b4895 100644 --- a/sci-biology/jellyfish/jellyfish-2.1.3.ebuild +++ b/sci-biology/jellyfish/jellyfish-2.1.3.ebuild @@ -6,7 +6,7 @@ EAPI=5 DESCRIPTION="k-mer counter within reads for assemblies" HOMEPAGE="http://www.genome.umd.edu/jellyfish.html" -SRC_URI="ftp://ftp.genome.umd.edu/pub/jellyfish/jellyfish-2.1.3.tar.gz +SRC_URI="ftp://ftp.genome.umd.edu/pub/${PN}/${P}.tar.gz ftp://ftp.genome.umd.edu/pub/jellyfish/JellyfishUserGuide.pdf" # older version is hidden in trinityrnaseq_r20140413p1/trinity-plugins/jellyfish-1.1.11 @@ -21,7 +21,7 @@ RDEPEND="${DEPEND}" src_install(){ default - sed -e 's#jellyfish-2.1.3#jellyfish#' -i "${D}"/usr/lib64/pkgconfig/jellyfish-2.0.pc || die + sed -e "s#jellyfish-${PV}#jellyfish#" -i "${D}"/usr/lib64/pkgconfig/jellyfish-2.0.pc || die mkdir -p "${D}/usr/include/${PN}" || die mv "${D}"/usr/include/"${P}"/"${PN}"/* "${D}/usr/include/${PN}/" || die rm -rf "${D}/usr/include/${P}" diff --git a/sci-biology/jellyfish/jellyfish-2.1.4.ebuild b/sci-biology/jellyfish/jellyfish-2.1.4.ebuild new file mode 100644 index 000000000..0d45b4895 --- /dev/null +++ b/sci-biology/jellyfish/jellyfish-2.1.4.ebuild @@ -0,0 +1,28 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: $ + +EAPI=5 + +DESCRIPTION="k-mer counter within reads for assemblies" +HOMEPAGE="http://www.genome.umd.edu/jellyfish.html" +SRC_URI="ftp://ftp.genome.umd.edu/pub/${PN}/${P}.tar.gz + ftp://ftp.genome.umd.edu/pub/jellyfish/JellyfishUserGuide.pdf" + +# older version is hidden in trinityrnaseq_r20140413p1/trinity-plugins/jellyfish-1.1.11 + +LICENSE="GPL-3" +SLOT="0" +KEYWORDS="~amd64 ~x86" +IUSE="" + +DEPEND="" +RDEPEND="${DEPEND}" + +src_install(){ + default + sed -e "s#jellyfish-${PV}#jellyfish#" -i "${D}"/usr/lib64/pkgconfig/jellyfish-2.0.pc || die + mkdir -p "${D}/usr/include/${PN}" || die + mv "${D}"/usr/include/"${P}"/"${PN}"/* "${D}/usr/include/${PN}/" || die + rm -rf "${D}/usr/include/${P}" +} |