blob: 7f1c9ba6e278f09b43e4f0609fe77c0a26e29d02 (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
|
# Copyright 1999-2011 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-libs/cctbx/cctbx-2010.03.29.2334-r4.ebuild,v 1.3 2011/06/21 15:36:26 jlec Exp $
EAPI="3"
PYTHON_DEPEND="2"
inherit eutils fortran-2 prefix python toolchain-funcs
MY_PV="${PV//./_}"
DESCRIPTION="Computational Crystallography Toolbox"
HOMEPAGE="http://cctbx.sourceforge.net/"
SRC_URI="http://cci.lbl.gov/cctbx_build/results/${MY_PV}/${PN}_bundle.tar.gz -> ${P}.tar.gz"
LICENSE="cctbx-2.0"
SLOT="0"
KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux"
IUSE="+minimal openmp threads"
RDEPEND="
virtual/fortran
>dev-libs/boost-1.39
sci-libs/clipper
sci-libs/fftw
!minimal? (
sci-chemistry/cns
sci-chemistry/shelx )"
DEPEND="${RDEPEND}
>=dev-util/scons-1.2"
S="${WORKDIR}"
MY_S="${WORKDIR}"/cctbx_sources
MY_B="${WORKDIR}"/cctbx_build
pkg_setup() {
use openmp && FORTRAN_NEED_OPENMP="1"
fortran-2_pkg_setup
if use openmp && ! tc-has-openmp; then
ewarn "You are using gcc and OpenMP is only available with gcc >= 4.2 and icc"
ewarn "If you want to build ${PN} with OpenMP, abort now,"
ewarn "and switch CC to an OpenMP capable compiler"
fi
python_set_active_version 2
}
src_prepare() {
local opts
local optsld
epatch \
"${FILESDIR}"/${PV}-tst_server.py.patch \
"${FILESDIR}"/${PV}-boost.patch \
"${FILESDIR}"/${PV}-clipper.patch \
"${FILESDIR}"/${PV}-flags.patch \
"${FILESDIR}"/${PV}-soname.patch \
"${FILESDIR}"/${PV}-gcc-4.6.patch
eprefixify "${MY_S}"/scitbx/libtbx_refresh.py
rm -rf "${MY_S}/scons" "${MY_S}/boost" "${MY_S}/PyCifRW" || die
find "${MY_S}/clipper" -name "*.h" -delete || die
echo "import os, sys; os.execvp('scons', sys.argv)" > "${MY_S}"/libtbx/command_line/scons.py
}
src_configure() {
local compiler
local myconf
myconf="${MY_S}/libtbx/configure.py"
compiler=$(expr match "$(tc-getCC)" '.*\([a-z]cc\)')
myconf="${myconf} --compiler=${compiler}"
# Additional USE flag usage
check_use openmp
myconf="${myconf} --enable-openmp-if-possible=${USE_openmp}"
use threads && USEthreads="--enable-boost-threads" && \
ewarn "If using boost threads openmp support is disabled"
myconf="${myconf} ${USE_threads} --scan-boost --use_environment_flags"
mkdir "${MY_B}" && myconf="${myconf} --current_working_directory=${MY_B}"
cd "${MY_B}"
myconf="${myconf} --build=release fftw3tbx rstbx smtbx mmtbx clipper_adaptbx fable"
einfo "configuring with ${python} ${myconf}"
$(PYTHON) ${myconf} || die "configure failed"
}
src_compile() {
local makeopts_exp
cd "${MY_B}"
makeopts_exp=${MAKEOPTS/j/j }
makeopts_exp=${makeopts_exp%-l[0-9]*}
source setpaths_all.sh
einfo "compiling with libtbx.scons ${makeopts_exp}"
libtbx.scons ${makeopts_exp} .|| die "make failed"
}
src_test(){
source "${MY_B}"/setpaths_all.sh
libtbx.python $(libtbx.show_dist_paths boost_adaptbx)/tests/tst_rational.py && \
libtbx.python ${SCITBX_DIST}/run_tests.py ${MAKEOPTS_EXP} && \
libtbx.python ${CCTBX_DIST}/run_tests.py ${MAKEOPTS_EXP} \
|| die "test failed"
}
src_install(){
# find cctbx_build/ -type f \( -name "*.py" -o -name "*sh" \) -exec \
# sed -e "s:${MY_S}:${EPREFIX}/usr/$(get_libdir)/cctbx/cctbx_sources:g" \
# -e "s:${MY_B}:${EPREFIX}/usr/$(get_libdir)/cctbx/cctbx_build:g" \
# -i '{}' \; || die "Fail to correct path"
sed \
-e "s:${MY_B}:${EPREFIX}/usr:g" \
-e "s:${MY_S}:${EPREFIX}/$(python_get_sitedir):g" \
-i "${MY_B}/libtbx_env" || die
insinto /usr/share/cctbx
doins "${MY_B}/libtbx_env" || die
ebegin "removing unnessary files"
rm -r "${S}"/cctbx_sources/{clipper,ccp4io,ucs-fonts,TAG} || die "failed to remove uneeded scons"
find "${S}" -type f -name "*conftest*" -delete || die "failed to remove uneeded *.o"
find "${S}" -type f -name "*.o" -delete || die "failed to remove uneeded *.o"
find "${S}" -type f -name "*.c" -delete || die "failed to remove uneeded *.c"
find "${S}" -type f -name "*.f" -delete || die "failed to remove uneeded *.c"
find "${S}" -type f -name "*.cpp" -delete || die "failed to remove uneeded *.cpp"
find "${S}" -type f -name "*.pyc" -delete || die "failed to remove uneeded *.pyc"
find "${S}" -type f -name "SCons*" -delete || die "failed to remove uneeded *.pyc"
find "${S}" -type f -name "Makefile" -delete || die "failed to remove uneeded *.pyc"
find "${S}" -type f -name "config.log" -delete || die "failed to remove uneeded *.pyc"
find "${S}" -type d -empty -delete || die
find "${MY_B}" -maxdepth 1 -type f -delete || die
eend
dobin "${MY_B}"/bin/* || die
rm -rf "${MY_B}/bin"
dolib.so "${MY_B}"/lib/lib* || die
rm -f "${MY_B}"/lib/lib*
insinto /usr/include
doins -r "${MY_B}"/include/* || die
rm -rf "${MY_B}/include"
insinto /usr/libexec/${PN}
doins -r "${MY_B}"/* || die
find "${ED}"/usr/libexec/${PN} -type f -exec chmod 755 '{}' \;
cd "${MY_S}"
insinto $(python_get_sitedir)
doins -r * || die
exeinto $(python_get_sitedir)
doexe "${MY_B}"/lib/* || die
rm -rvf "${MY_B}/lib"
sed \
-e "/PYTHONPATH/s:${MY_S}:$(python_get_sitedir):g" \
-e "/PYTHONPATH/s:${MY_B}:$(python_get_sitedir):g" \
-e "/LD_LIBRARY_PATH/s:${MY_B}/lib:${EPREFIX}/usr/$(get_libdir):g" \
-e "/PATH/s:${MY_B}/bin:${EPREFIX}/usr/bin:g" \
-e "/PATH/s:${MY_B}/exe:${EPREFIX}/usr/bin:g" \
-e "/exec/s:${MY_S}:$(python_get_sitedir):g" \
-e "/LIBTBX_BUILD/s:${MY_B}:${EPREFIX}/usr/share/cctbx:g" \
-e "s:${MY_B}/exe_dev/:${EPREFIX}/usr/libexec/${PN}/exe_dev/:g" \
-i "${ED}"/usr/bin/* || die
}
pkg_postinst () {
python_mod_optimize boost_adaptbx cbflib_adaptbx ccp4io_adaptbx cctbx chiltbx clipper_adaptbx crys3d fable fftw3tbx gltbx iotbx libtbx mmtbx omptbx rstbx scitbx smtbx spotfinder tntbx
}
pkg_postrm () {
python_mod_cleanup boost_adaptbx cbflib_adaptbx ccp4io_adaptbx cctbx chiltbx clipper_adaptbx crys3d fable fftw3tbx gltbx iotbx libtbx mmtbx omptbx rstbx scitbx smtbx spotfinder tntbx
}
check_use() {
for var in $@; do
if use ${var}; then
printf -v "USE_$var" True
else
printf -v "USE_$var" False
fi
shift
done
}
|