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# Copyright 1999-2012 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/balbes/balbes-1.0.0_p100317-r2.ebuild,v 1.4 2012/10/19 09:39:51 jlec Exp $
EAPI=3
CCP4VER="6.1.3"
PYTHON_DEPEND="2"
inherit eutils fortran-2 python toolchain-funcs
DESCRIPTION="Automated molecular replacement (MR) pipeline"
HOMEPAGE="http://www.ysbl.york.ac.uk/~fei/balbes/index.html"
SRC_URI="
mirror://gentoo/${P}.tar.gz
ftp://ftp.ccp4.ac.uk/ccp4/${CCP4VER}/ccp4-${CCP4VER}-core-src.tar.gz"
SLOT="0"
LICENSE="ccp4"
KEYWORDS="amd64 ~ppc x86 ~amd64-linux ~x86-linux"
IUSE=""
# bundled PyXML is modified and cannot be replaced
COMMON_DEPEND="sci-libs/ccp4-libs"
RDEPEND="${COMMON_DEPEND}
~sci-libs/balbes-db-${CCP4VER}
!<=sci-chemistry/ccp4-apps-6.1.3-r1"
DEPEND="${COMMON_DEPEND}"
S="${WORKDIR}"/src
pkg_setup() {
fortran-2_pkg_setup
python_set_active_version 2
}
src_unpack() {
unpack ${P}.tar.gz
tar xvzf "${DISTDIR}"/ccp4-${CCP4VER}-core-src.tar.gz \
ccp4-${CCP4VER}/share/balbes/BALBES_0.0.1/bin_py \
ccp4-${CCP4VER}/share/balbes/BALBES_0.0.1/PyXML-0.8.4
python_convert_shebangs 2 "${WORKDIR}"/ccp4-${CCP4VER}/share/balbes/BALBES_0.0.1/bin_py/balbes
}
src_prepare() {
mkdir "${WORKDIR}"/bin || die
epatch "${FILESDIR}"/${PV}-makefile.patch
cd "${WORKDIR}"/ccp4-${CCP4VER}/share/balbes/BALBES_0.0.1/
epatch "${FILESDIR}"/pyxml-0.8.4-python-2.6.patch
}
src_compile() {
emake \
BLANC_FORT="$(tc-getFC) ${FFLAGS}" || die
cd "${WORKDIR}"/ccp4-${CCP4VER}/share/balbes/BALBES_0.0.1/PyXML-0.8.4
find build -delete
$(PYTHON) setup.py build
find xml/xslt test -delete
}
src_install() {
insinto /usr/share/balbes/BALBES_0.0.1/
doins -r \
"${WORKDIR}"/ccp4-${CCP4VER}/share/balbes/BALBES_0.0.1/bin_py \
"${WORKDIR}"/ccp4-${CCP4VER}/share/balbes/BALBES_0.0.1/PyXML-0.8.4 || die
dobin \
"${WORKDIR}"/bin/* \
"${WORKDIR}"/ccp4-${CCP4VER}/share/balbes/BALBES_0.0.1/bin_py/balbes \
|| die
}
pkg_postinst() {
python_mod_optimize /usr/share/balbes/BALBES_0.0.1/{bin_py,PyXML-0.8.4}
}
pkg_postrm() {
python_mod_cleanup /usr/share/balbes/BALBES_0.0.1/{bin_py,PyXML-0.8.4}
}
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