Version bump and removed old ebuilds.

(Portage version: 2.2_rc1/cvs/Linux 2.6.25-SENTINEL-4 i686)

2 files changed, 168 insertions, 0 deletions

diff --git a/sci-libs/lapack-atlas/files/atlas-3.9.0-disable-ilaenv.patch b/sci-libs/lapack-atlas/files/atlas-3.9.0-disable-ilaenv.patch
new file mode 100644
index 000000000000..a75457153b56
--- /dev/null
+++ b/sci-libs/lapack-atlas/files/atlas-3.9.0-disable-ilaenv.patch
@@ -0,0 +1,147 @@
+diff -Naur ATLAS/makes/Make.Flp ATLAS.new/makes/Make.Flp
+--- ATLAS/makes/Make.Flp	2008-07-20 13:48:42.000000000 -0400
++++ ATLAS.new/makes/Make.Flp	2008-07-20 13:47:53.000000000 -0400
+@@ -5,10 +5,10 @@
+ 
+ ilaobj = icmax1.o ilaver.o iparmq.o izmax1.o lsamen.o
+ 
+-sobj = ATL_f77wrap_ilaenv.o ATL_f77wrap_sgesv.o ATL_f77wrap_sgetnb.o \
++sobj = ATL_f77wrap_sgesv.o ATL_f77wrap_sgetnb.o \
+        ATL_f77wrap_sgetrf.o ATL_f77wrap_sgetri.o ATL_f77wrap_sgetrs.o \
+        ATL_f77wrap_slauum.o ATL_f77wrap_sposv.o ATL_f77wrap_spotrf.o \
+-       ATL_f77wrap_spotrs.o ATL_f77wrap_strtri.o ieeeck.o ilaenv.o sgesv.o \
++       ATL_f77wrap_spotrs.o ATL_f77wrap_strtri.o ieeeck.o sgesv.o \
+        sgetrf.o sgetri.o sgetrs.o slauum.o sposv.o spotrf.o spotri.o spotrs.o \
+        strtri.o
+ 
+@@ -65,9 +65,9 @@
+ dobj = ATL_f77wrap_dgesv.o ATL_f77wrap_dgetnb.o ATL_f77wrap_dgetrf.o \
+        ATL_f77wrap_dgetri.o ATL_f77wrap_dgetrs.o ATL_f77wrap_dlauum.o \
+        ATL_f77wrap_dposv.o ATL_f77wrap_dpotrf.o ATL_f77wrap_dpotrs.o \
+-       ATL_f77wrap_dtrtri.o ATL_f77wrap_ilaenv.o dgesv.o dgetrf.o dgetri.o \
+-       dgetrs.o dlauum.o dposv.o dpotrf.o dpotri.o dpotrs.o dtrtri.o ieeeck.o \
+-       ilaenv.o
++       ATL_f77wrap_dtrtri.o dgesv.o dgetrf.o dgetri.o \
++       dgetrs.o dlauum.o dposv.o dpotrf.o dpotri.o dpotrs.o dtrtri.o ieeeck.o 
++       
+ 
+ dlaobj = dbdsdc.o dbdsqr.o ddisna.o dgbbrd.o dgbcon.o dgbequ.o dgbsv.o \
+          dgbsvx.o dgbtf2.o dgbtrf.o dgbtrs.o dgebak.o dgebal.o dgebd2.o \
+@@ -122,9 +122,9 @@
+ cobj = ATL_f77wrap_cgesv.o ATL_f77wrap_cgetnb.o ATL_f77wrap_cgetrf.o \
+        ATL_f77wrap_cgetri.o ATL_f77wrap_cgetrs.o ATL_f77wrap_clauum.o \
+        ATL_f77wrap_cposv.o ATL_f77wrap_cpotrf.o ATL_f77wrap_cpotrs.o \
+-       ATL_f77wrap_ctrtri.o ATL_f77wrap_ilaenv.o cgesv.o cgetrf.o cgetri.o \
+-       cgetrs.o clauum.o cposv.o cpotrf.o cpotri.o cpotrs.o ctrtri.o ieeeck.o \
+-       ilaenv.o
++       ATL_f77wrap_ctrtri.o cgesv.o cgetrf.o cgetri.o \
++       cgetrs.o clauum.o cposv.o cpotrf.o cpotri.o cpotrs.o ctrtri.o ieeeck.o 
++       
+ 
+ claobj = cbdsqr.o cgbbrd.o cgbcon.o cgbequ.o cgbrfs.o cgbsv.o cgbsvx.o \
+          cgbtf2.o cgbtrf.o cgbtrs.o cgebak.o cgebal.o cgebd2.o cgebrd.o \
+@@ -171,10 +171,10 @@
+          cunmlq.o cunmql.o cunmqr.o cunmr2.o cunmr3.o cunmrq.o cunmrz.o \
+          cunmtr.o cupgtr.o cupmtr.o scsum1.o slamch.o
+ 
+-zobj = ATL_f77wrap_ilaenv.o ATL_f77wrap_zgesv.o ATL_f77wrap_zgetnb.o \
++zobj = ATL_f77wrap_zgesv.o ATL_f77wrap_zgetnb.o \
+        ATL_f77wrap_zgetrf.o ATL_f77wrap_zgetri.o ATL_f77wrap_zgetrs.o \
+        ATL_f77wrap_zlauum.o ATL_f77wrap_zposv.o ATL_f77wrap_zpotrf.o \
+-       ATL_f77wrap_zpotrs.o ATL_f77wrap_ztrtri.o ieeeck.o ilaenv.o zgesv.o \
++       ATL_f77wrap_zpotrs.o ATL_f77wrap_ztrtri.o ieeeck.o zgesv.o \
+        zgetrf.o zgetri.o zgetrs.o zlauum.o zposv.o zpotrf.o zpotri.o zpotrs.o \
+        ztrtri.o
+ 
+@@ -228,7 +228,7 @@
+ lib : dlib slib zlib clib
+ clean : dclean sclean zclean cclean iclean
+ iclean :
+-	rm -f $(ilaobj) ilaenv.o ieeeck.o
++	rm -f $(ilaobj) ieeeck.o
+ 
+ sclean :
+ 	rm -f $(sobj) slib.grd slalib.grd $(slaobj)
+@@ -460,12 +460,8 @@
+ 	$(ICC) $(ICCFLAGS) -o $@ -c -DDCPLX $(mySRCdir)/f77wrap/ATL_f77wrap_getnb.c
+ 
+ 
+-ATL_f77wrap_ilaenv.o : $(mySRCdir)/f77wrap/ATL_f77wrap_ilaenv.c
+-	$(ICC) $(ICCFLAGS) -o $@ -c $(mySRCdir)/f77wrap/ATL_f77wrap_ilaenv.c
+ ieeeck.o : $(mySRCdir)/ieeeck.f
+ 	$(F77) -o $@ -c $(F77FLAGS) $(mySRCdir)/ieeeck.f
+-ilaenv.o : $(mySRCdir)/ilaenv.f
+-	$(F77) -o $@ -c $(F77FLAGS) $(mySRCdir)/ilaenv.f
+ 
+ #
+ #  All the rest of these files are compiled directly from netlib LAPACK
+diff -Naur ATLAS/makes/Make.lpsrc ATLAS.new/makes/Make.lpsrc
+--- ATLAS/makes/Make.lpsrc	2008-07-20 13:48:42.000000000 -0400
++++ ATLAS.new/makes/Make.lpsrc	2008-07-20 13:46:37.000000000 -0400
+@@ -1,15 +1,11 @@
+ include Make.inc
+ mySRCdir = $(SRCdir)/src/lapack
+ 
+-iobj = ATL_ilaenv.o
+-
+ include $(INCSdir)/gentoo_libtool.inc
+ 
+ all : lib
+ lib : dlib slib zlib clib
+ clean : sclean dclean cclean zclean iclean
+-iclean :
+-	rm -f $(iobj)
+ 
+ sobj = ATL_sgetrf.o ATL_sgetrfC.o ATL_sgetrfR.o ATL_sgetri.o ATL_sgetriC.o \
+        ATL_sgetriR.o ATL_sgetrs.o ATL_slaswp.o ATL_slauum.o ATL_slauumCL.o \
+@@ -20,8 +16,8 @@
+ incdep = $(INCSdir)/atlas_lapack.h
+ slib : 
+ 	$(PMAKE) slib.grd
+-slib.grd : $(sobj) $(iobj)
+-	$(ARCHIVER) $(ARFLAGS) $(LAPACKlib) $(sobj) $(iobj)
++slib.grd : $(sobj) 
++	$(ARCHIVER) $(ARFLAGS) $(LAPACKlib) $(sobj) 
+ 	$(RANLIB) $(LAPACKlib)
+ 	touch slib.grd
+ 
+@@ -104,8 +100,8 @@
+ incdep = $(INCSdir)/atlas_lapack.h
+ dlib : 
+ 	$(PMAKE) dlib.grd
+-dlib.grd : $(dobj) $(iobj)
+-	$(ARCHIVER) $(ARFLAGS) $(LAPACKlib) $(dobj) $(iobj)
++dlib.grd : $(dobj) 
++	$(ARCHIVER) $(ARFLAGS) $(LAPACKlib) $(dobj)
+ 	$(RANLIB) $(LAPACKlib)
+ 	touch dlib.grd
+ 
+@@ -189,8 +185,8 @@
+ incdep = $(INCSdir)/atlas_lapack.h
+ clib : 
+ 	$(PMAKE) clib.grd
+-clib.grd : $(cobj) $(iobj)
+-	$(ARCHIVER) $(ARFLAGS) $(LAPACKlib) $(cobj) $(iobj)
++clib.grd : $(cobj) 
++	$(ARCHIVER) $(ARFLAGS) $(LAPACKlib) $(cobj) 
+ 	$(RANLIB) $(LAPACKlib)
+ 	touch clib.grd
+ 
+@@ -280,8 +276,8 @@
+ incdep = $(INCSdir)/atlas_lapack.h
+ zlib : 
+ 	$(PMAKE) zlib.grd
+-zlib.grd : $(zobj) $(iobj)
+-	$(ARCHIVER) $(ARFLAGS) $(LAPACKlib) $(zobj) $(iobj)
++zlib.grd : $(zobj) 
++	$(ARCHIVER) $(ARFLAGS) $(LAPACKlib) $(zobj) 
+ 	$(RANLIB) $(LAPACKlib)
+ 	touch zlib.grd
+ 
+@@ -362,6 +358,3 @@
+ zclean :
+ 	rm -f $(zobj)
+ 
+-ATL_ilaenv.o : $(mySRCdir)/ATL_ilaenv.c $(incdep)
+-	$(DKC) $(DKCFLAGS) $(CDEFS) -c -o ATL_ilaenv.o $(mySRCdir)/ATL_ilaenv.c
+-
diff --git a/sci-libs/lapack-atlas/files/atlas-3.9.0-upstream-fixes.patch b/sci-libs/lapack-atlas/files/atlas-3.9.0-upstream-fixes.patch
new file mode 100644
index 000000000000..a0e548f10d73
--- /dev/null
+++ b/sci-libs/lapack-atlas/files/atlas-3.9.0-upstream-fixes.patch
@@ -0,0 +1,21 @@
+diff -Naur ATLAS/src/auxil/ATL_ptflushcache.c ATLAS.new/src/auxil/ATL_ptflushcache.c
+--- ATLAS/src/auxil/ATL_ptflushcache.c	2008-07-17 21:24:53.000000000 -0400
++++ ATLAS.new/src/auxil/ATL_ptflushcache.c	2008-07-18 18:40:37.000000000 -0400
+@@ -88,7 +88,7 @@
+      }
+      fct[i].N = N;
+      fct[i].dp = cache+i*N;
+-     ATL_ptCF(fct+i);
++     ATL_ptCF(fct+i-1);
+      dret = fct[i].dret;
+      for (i=0; i < ATL_NTHREADS-1; i++)
+      {
+@@ -133,7 +133,7 @@
+    {
+       ATL_assert(!pthread_create(tp+i, &attr, ATL_ptCLF, fp));
+    }
+-   ATL_FlushAreaByCL(fp);   /* should be redundant, do to be safe */
++   ATL_FlushAreasByCL(fp);   /* should be redundant, do to be safe */
+    for (i=0; i < ATL_NTHREADS; i++)
+    {
+       ATL_assert(!pthread_join(tp[i], NULL));