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author | Olivier Fisette <ribosome@gentoo.org> | 2005-10-19 23:54:54 +0000 |
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committer | Olivier Fisette <ribosome@gentoo.org> | 2005-10-19 23:54:54 +0000 |
commit | 5f224b328bd29396143ca65419d9eeeaf3c3821d (patch) | |
tree | 55b67187871fe5d184e5c8b5e0f8180afed6810d /sci-biology/t-coffee | |
parent | Stable on alpha wrt security bug #109097 (diff) | |
download | gentoo-2-5f224b328bd29396143ca65419d9eeeaf3c3821d.tar.gz gentoo-2-5f224b328bd29396143ca65419d9eeeaf3c3821d.tar.bz2 gentoo-2-5f224b328bd29396143ca65419d9eeeaf3c3821d.zip |
New version
(Portage version: 2.0.51.22-r3)
Diffstat (limited to 'sci-biology/t-coffee')
-rw-r--r-- | sci-biology/t-coffee/ChangeLog | 7 | ||||
-rw-r--r-- | sci-biology/t-coffee/Manifest | 2 | ||||
-rw-r--r-- | sci-biology/t-coffee/files/digest-t-coffee-3.18 | 1 | ||||
-rw-r--r-- | sci-biology/t-coffee/t-coffee-3.18.ebuild | 49 |
4 files changed, 58 insertions, 1 deletions
diff --git a/sci-biology/t-coffee/ChangeLog b/sci-biology/t-coffee/ChangeLog index 2fb79eeb2e5c..d77312913a26 100644 --- a/sci-biology/t-coffee/ChangeLog +++ b/sci-biology/t-coffee/ChangeLog @@ -1,6 +1,11 @@ # ChangeLog for sci-biology/t-coffee # Copyright 1999-2005 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/t-coffee/ChangeLog,v 1.8 2005/10/17 17:47:06 ribosome Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/t-coffee/ChangeLog,v 1.9 2005/10/19 23:54:54 ribosome Exp $ + +*t-coffee-3.18 (19 Oct 2005) + + 19 Oct 2005; Olivier Fisette <ribosome@gentoo.org> +t-coffee-3.18.ebuild: + New version. 17 Oct 2005; Olivier Fisette <ribosome@gentoo.org> -t-coffee-2.50.ebuild: Pruning old version. diff --git a/sci-biology/t-coffee/Manifest b/sci-biology/t-coffee/Manifest index 156831a0700a..a504abc1d25d 100644 --- a/sci-biology/t-coffee/Manifest +++ b/sci-biology/t-coffee/Manifest @@ -1,4 +1,6 @@ MD5 6fb318682c83d5a0f5d956f5272a66c6 t-coffee-2.66.ebuild 1142 +MD5 1b3cfe698f44aa57293497f6c09c7dc5 t-coffee-3.18.ebuild 1476 MD5 f5115567e411d3524b23f98a8c0e1acd ChangeLog 1421 MD5 0bbfd32ca9864625c55ab6460dbbd963 metadata.xml 755 MD5 ed78ff61d489ff54debcffde53dca64e files/digest-t-coffee-2.66 87 +MD5 1b980450cd09068868ab6fc2868cd19e files/digest-t-coffee-3.18 87 diff --git a/sci-biology/t-coffee/files/digest-t-coffee-3.18 b/sci-biology/t-coffee/files/digest-t-coffee-3.18 new file mode 100644 index 000000000000..18345cb2e017 --- /dev/null +++ b/sci-biology/t-coffee/files/digest-t-coffee-3.18 @@ -0,0 +1 @@ +MD5 e671383b9e6b90ded56c615acd2f51c4 T-COFFEE_distribution_Version_3.18.tar.gz 1540558 diff --git a/sci-biology/t-coffee/t-coffee-3.18.ebuild b/sci-biology/t-coffee/t-coffee-3.18.ebuild new file mode 100644 index 000000000000..c3abe7f0a6b0 --- /dev/null +++ b/sci-biology/t-coffee/t-coffee-3.18.ebuild @@ -0,0 +1,49 @@ +# Copyright 1999-2005 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/t-coffee/t-coffee-3.18.ebuild,v 1.1 2005/10/19 23:54:54 ribosome Exp $ + +inherit toolchain-funcs + +DESCRIPTION="A multiple sequence alignment package" +LICENSE="t-coffee" +HOMEPAGE="http://igs-server.cnrs-mrs.fr/~cnotred/Projects_home_page/t_coffee_home_page.html" +SRC_URI="http://igs-server.cnrs-mrs.fr/~cnotred/Packages/T-COFFEE_distribution_Version_${PV}.tar.gz" + +SLOT="0" +IUSE="" +KEYWORDS="~ppc ~x86" + +RESTRICT="nomirror" + +DEPEND="sci-biology/clustalw" + +TCDIR="${WORKDIR}/T-COFFEE_distribution_Version_${PV}" +S="${TCDIR}/t_coffee_source" + +src_unpack(){ + unpack ${A} + cd "${S}" + sed -e "s/CC = cc/CC = $(tc-getCC) ${CFLAGS}/" -i makefile || die \ + "Failed to patch makefile." +} + +src_compile() { + make all || die "Compilation failed." +} + +src_install() { + cd "${TCDIR}"/bin + dobin t_coffee || die "Failed to install program." + insinto /usr/share/${PN}/lib/html + doins ${TCDIR}/html/* || die "Failed to install HTML documentation," + + dodoc ${TCDIR}/doc/README4T-COFFEE || die \ + "Failed to install basic documentation." + insinto /usr/share/doc/${PF} + doins ${TCDIR}/doc/t_coffee{_doc.{doc,pdf},.pdf} || die \ + "Failed to install manuals and articles." + doins ${TCDIR}/doc/*.txt || die "Failed to install documentation." + + insinto /usr/share/${PN}/example + doins ${TCDIR}/example/* || die "Failed to install example files." +} |