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| author |   Justin Lecher <jlec@gentoo.org> | 2013-11-05 19:34:55 +0000 |
|---|---|---|
| committer | Justin Lecher <jlec@gentoo.org> | 2013-11-05 19:34:55 +0000 |
| commit | a6046706adc847421a540efd53aeebeb80b61221 (patch) | |
| tree | 97913179e93bb7f85abfacd96ecd1975c3fa3d87 /sci-biology/psipred | |
| parent | Revision bump to add ruby20. (diff) | |
| download | gentoo-2-a6046706adc847421a540efd53aeebeb80b61221.tar.gz gentoo-2-a6046706adc847421a540efd53aeebeb80b61221.tar.bz2 gentoo-2-a6046706adc847421a540efd53aeebeb80b61221.zip | |
sci-biology/psipred: Version BUmp
(Portage version: 2.2.7/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
Diffstat (limited to 'sci-biology/psipred')
| -rw-r--r-- | sci-biology/psipred/ChangeLog | 8 | ||||
| -rw-r--r-- | sci-biology/psipred/metadata.xml | 8 | ||||
| -rw-r--r-- | sci-biology/psipred/psipred-3.4.ebuild | 56 |
3 files changed, 67 insertions, 5 deletions
diff --git a/sci-biology/psipred/ChangeLog b/sci-biology/psipred/ChangeLog index 5f023bb90b4a..8d6b125f2e7b 100644 --- a/sci-biology/psipred/ChangeLog +++ b/sci-biology/psipred/ChangeLog @@ -1,6 +1,12 @@ # ChangeLog for sci-biology/psipred # Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/psipred/ChangeLog,v 1.9 2013/06/19 03:42:49 bicatali Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/psipred/ChangeLog,v 1.10 2013/11/05 19:34:55 jlec Exp $ + +*psipred-3.4 (05 Nov 2013) + + 05 Nov 2013; Justin Lecher <jlec@gentoo.org> +psipred-3.4.ebuild, + metadata.xml: + Version BUmp 19 Jun 2013; Sébastien Fabbro <bicatali@gentoo.org> metadata.xml: herd is now sci-biology diff --git a/sci-biology/psipred/metadata.xml b/sci-biology/psipred/metadata.xml index 3dc75947cefe..655b161c218d 100644 --- a/sci-biology/psipred/metadata.xml +++ b/sci-biology/psipred/metadata.xml @@ -1,8 +1,8 @@ <?xml version="1.0" encoding="UTF-8"?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> -<herd>sci-biology</herd> -<maintainer> - <email>jlec@gentoo.org</email> -</maintainer> + <herd>sci-biology</herd> + <maintainer> + <email>jlec@gentoo.org</email> + </maintainer> </pkgmetadata> diff --git a/sci-biology/psipred/psipred-3.4.ebuild b/sci-biology/psipred/psipred-3.4.ebuild new file mode 100644 index 000000000000..9a20b4ec3568 --- /dev/null +++ b/sci-biology/psipred/psipred-3.4.ebuild @@ -0,0 +1,56 @@ +# Copyright 1999-2013 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/psipred/psipred-3.4.ebuild,v 1.1 2013/11/05 19:34:55 jlec Exp $ + +EAPI=5 + +inherit eutils prefix toolchain-funcs versionator + +#MY_P="${PN}$(delete_all_version_separators)" +MY_P="${PN}${PV}" + +DESCRIPTION="Protein Secondary Structure Prediction" +HOMEPAGE="http://bioinf.cs.ucl.ac.uk/psipred/" +SRC_URI=" + http://bioinf.cs.ucl.ac.uk/downloads/${PN}/${MY_P}.tar.gz + test? ( http://bioinfadmin.cs.ucl.ac.uk/downloads/psipred/old/data/tdbdata.tar.gz )" + +LICENSE="psipred" +SLOT="0" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +IUSE="test" + +RDEPEND=" + app-shells/tcsh + sci-biology/ncbi-tools + sci-biology/ncbi-tools++" +DEPEND="" + +S="${WORKDIR}"/${PN} + +src_prepare() { + rm -f bin/* + epatch \ + "${FILESDIR}"/3.1-Makefile.patch \ + "${FILESDIR}"/3.1-path.patch \ + "${FILESDIR}"/3.2-fgets.patch + eprefixify runpsipred* + emake -C src clean +} + +src_compile() { + emake -C src CC=$(tc-getCC) +} + +src_install() { + emake -C src DESTDIR="${D}" install + dobin runpsipred* bin/* BLAST+/runpsipred* + insinto /usr/share/${PN} + doins -r data + dodoc README +} + +pkg_postinst() { + elog "Please use the update_blastdb.pl in order to" + elog "maintain your own local blastdb" +} |