diff options
| author |   Andrey Kislyuk <weaver@gentoo.org> | 2009-07-07 23:09:24 +0000 |
|---|---|---|
| committer | Andrey Kislyuk <weaver@gentoo.org> | 2009-07-07 23:09:24 +0000 |
| commit | 362e45c721983635955013539cbe63006804b3cc (patch) | |
| tree | 95944b2c6d2bffa727cd976fe30a0c992e54f6c1 /sci-biology/allpaths | |
| parent | Use elog for fetch error. (diff) | |
| download | gentoo-2-362e45c721983635955013539cbe63006804b3cc.tar.gz gentoo-2-362e45c721983635955013539cbe63006804b3cc.tar.bz2 gentoo-2-362e45c721983635955013539cbe63006804b3cc.zip | |
New package, ebuild written by me
(Portage version: 2.2_rc30/cvs/Linux x86_64)
Diffstat (limited to 'sci-biology/allpaths')
| -rw-r--r-- | sci-biology/allpaths/ChangeLog | 10 | ||||
| -rw-r--r-- | sci-biology/allpaths/allpaths-2.0.ebuild | 32 | ||||
| -rw-r--r-- | sci-biology/allpaths/metadata.xml | 9 |
3 files changed, 51 insertions, 0 deletions
diff --git a/sci-biology/allpaths/ChangeLog b/sci-biology/allpaths/ChangeLog new file mode 100644 index 000000000000..ef233e7ad61e --- /dev/null +++ b/sci-biology/allpaths/ChangeLog @@ -0,0 +1,10 @@ +# ChangeLog for sci-biology/allpaths +# Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/allpaths/ChangeLog,v 1.1 2009/07/07 23:09:24 weaver Exp $ + +*allpaths-2.0 (07 Jul 2009) + + 07 Jul 2009; Andrey Kislyuk <weaver@gentoo.org> +metadata.xml, + +allpaths-2.0.ebuild: + New package, ebuild written by me + diff --git a/sci-biology/allpaths/allpaths-2.0.ebuild b/sci-biology/allpaths/allpaths-2.0.ebuild new file mode 100644 index 000000000000..c6da62f0c1eb --- /dev/null +++ b/sci-biology/allpaths/allpaths-2.0.ebuild @@ -0,0 +1,32 @@ +# Copyright 1999-2009 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/allpaths/allpaths-2.0.ebuild,v 1.1 2009/07/07 23:09:24 weaver Exp $ + +EAPI="2" + +DESCRIPTION="De novo assembly of whole-genome shotgun microreads" +HOMEPAGE="http://www.broadinstitute.org/science/programs/genome-biology/crd" +SRC_URI="ftp://ftp.broad.mit.edu/pub/crd/ALLPATHS/Release-2-0/allpaths-2.0.tar.gz + ftp://ftp.broad.mit.edu/pub/crd/ALLPATHS/Release-2-0/allpaths-2.0.manual.docx" + +LICENSE="Whitehead-MIT" +SLOT="0" +IUSE="" +KEYWORDS="~amd64 ~x86" + +# TODO: info message on failure instructing to run gcc-config +DEPEND=">=sys-devel/gcc-4.3.2" +RDEPEND="" + +S="${WORKDIR}" + +src_prepare() { + rm -f libxerces* || die +} + +src_install() { + rm -rf bin/auxfiles + dobin bin/* || die + insinto /usr/share/doc/${PF} + doins "${DISTDIR}/${P}.manual.docx" +} diff --git a/sci-biology/allpaths/metadata.xml b/sci-biology/allpaths/metadata.xml new file mode 100644 index 000000000000..3302123e5718 --- /dev/null +++ b/sci-biology/allpaths/metadata.xml @@ -0,0 +1,9 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <maintainer> + <email>weaver@gentoo.org</email> + <name>Andrey Kislyuk</name> + </maintainer> + <herd>sci-biology</herd> +</pkgmetadata> |