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| author |   Robin H. Johnson <robbat2@gentoo.org> | 2011-09-05 18:07:13 +0000 |
|---|---|---|
| committer | Robin H. Johnson <robbat2@gentoo.org> | 2011-09-05 18:07:13 +0000 |
| commit | 9d711b8e713f3e188316898b7b576413c3d956c7 (patch) | |
| tree | ce3d70e2a14d72b421be22f8cdffeb9a03cbcf6f /dev-perl/Bio-SamTools | |
| parent | Fails to build without opengl (bug #378191) (diff) | |
| download | gentoo-2-9d711b8e713f3e188316898b7b576413c3d956c7.tar.gz gentoo-2-9d711b8e713f3e188316898b7b576413c3d956c7.tar.bz2 gentoo-2-9d711b8e713f3e188316898b7b576413c3d956c7.zip | |
Version bump via perl-bump experimental tool.
(Portage version: 2.2.0_alpha51/cvs/Linux x86_64)
Diffstat (limited to 'dev-perl/Bio-SamTools')
| -rw-r--r-- | dev-perl/Bio-SamTools/Bio-SamTools-1.300.0.ebuild | 33 | ||||
| -rw-r--r-- | dev-perl/Bio-SamTools/ChangeLog | 8 |
2 files changed, 40 insertions, 1 deletions
diff --git a/dev-perl/Bio-SamTools/Bio-SamTools-1.300.0.ebuild b/dev-perl/Bio-SamTools/Bio-SamTools-1.300.0.ebuild new file mode 100644 index 000000000000..498469d5f999 --- /dev/null +++ b/dev-perl/Bio-SamTools/Bio-SamTools-1.300.0.ebuild @@ -0,0 +1,33 @@ +# Copyright 1999-2011 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/dev-perl/Bio-SamTools/Bio-SamTools-1.300.0.ebuild,v 1.1 2011/09/05 18:07:13 robbat2 Exp $ + +EAPI=4 + +MODULE_AUTHOR=LDS +MODULE_VERSION=1.30 +inherit perl-module + +DESCRIPTION="Read SAM/BAM database files" + +SLOT="0" +KEYWORDS="~amd64 ~x86" +IUSE="" + +DEPEND="sci-biology/bioperl + sci-biology/samtools" +RDEPEND="${DEPEND} + virtual/perl-ExtUtils-CBuilder + virtual/perl-Module-Build +" + +SRC_TEST=do + +src_prepare() { + sed -i -e 's|my $HeaderFile = "bam.h";|my $HeaderFile = "bam/bam.h";|' \ + -e 's|my $LibFile = "libbam.a";|my $LibFile = "libbam.so";|' Build.PL || die + sed -i -e 's|#include "bam.h"|#include "bam/bam.h"|' \ + -e 's|#include "khash.h"|#include "bam/khash.h"|' \ + -e 's|#include "faidx.h"|#include "bam/faidx.h"|' lib/Bio/DB/Sam.xs || die + perl-module_src_prepare +} diff --git a/dev-perl/Bio-SamTools/ChangeLog b/dev-perl/Bio-SamTools/ChangeLog index ba506926e63c..4eca3ee318ba 100644 --- a/dev-perl/Bio-SamTools/ChangeLog +++ b/dev-perl/Bio-SamTools/ChangeLog @@ -1,6 +1,12 @@ # ChangeLog for dev-perl/Bio-SamTools # Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/dev-perl/Bio-SamTools/ChangeLog,v 1.3 2011/09/04 11:20:46 tove Exp $ +# $Header: /var/cvsroot/gentoo-x86/dev-perl/Bio-SamTools/ChangeLog,v 1.4 2011/09/05 18:07:13 robbat2 Exp $ + +*Bio-SamTools-1.300.0 (05 Sep 2011) + + 05 Sep 2011; Robin H. Johnson <robbat2@gentoo.org> + +Bio-SamTools-1.300.0.ebuild: + Version bump via perl-bump experimental tool. 04 Sep 2011; Torsten Veller <tove@gentoo.org> -Bio-SamTools-1.29.ebuild: Cleanup |