Add licenses for several sci-* packages, bugs 455566, 455568, 455570, 455572, and 455574.

4 files changed, 134 insertions, 0 deletions

diff --git a/licenses/buddy b/licenses/buddy
new file mode 100644
index 000000000000..fe750b2e3269
--- /dev/null
+++ b/licenses/buddy
@@ -0,0 +1,26 @@
+           Copyright (C) 1996-2002 by Jorn Lind-Nielsen
+                        All rights reserved
+
+Permission is hereby granted, without written agreement and without
+license or royalty fees, to use, reproduce, prepare derivative
+works, distribute, and display this software and its documentation
+for any purpose, provided that (1) the above copyright notice and
+the following two paragraphs appear in all copies of the source code
+and (2) redistributions, including without limitation binaries,
+reproduce these notices in the supporting documentation. Substantial
+modifications to this software may be copyrighted by their authors
+and need not follow the licensing terms described here, provided
+that the new terms are clearly indicated in all files where they apply.
+
+IN NO EVENT SHALL JORN LIND-NIELSEN, OR DISTRIBUTORS OF THIS
+SOFTWARE BE LIABLE TO ANY PARTY FOR DIRECT, INDIRECT, SPECIAL,
+INCIDENTAL, OR CONSEQUENTIAL DAMAGES ARISING OUT OF THE USE OF THIS
+SOFTWARE AND ITS DOCUMENTATION, EVEN IF THE AUTHORS OR ANY OF THE
+ABOVE PARTIES HAVE BEEN ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+
+JORN LIND-NIELSEN SPECIFICALLY DISCLAIM ANY WARRANTIES, INCLUDING,
+BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND
+FITNESS FOR A PARTICULAR PURPOSE. THE SOFTWARE PROVIDED HEREUNDER IS
+ON AN "AS IS" BASIS, AND THE AUTHORS AND DISTRIBUTORS HAVE NO
+OBLIGATION TO PROVIDE MAINTENANCE, SUPPORT, UPDATES, ENHANCEMENTS, OR
+MODIFICATIONS.
diff --git a/licenses/minpack b/licenses/minpack
new file mode 100644
index 000000000000..132cc3f33fa7
--- /dev/null
+++ b/licenses/minpack
@@ -0,0 +1,51 @@
+Minpack Copyright Notice (1999) University of Chicago.  All rights reserved
+
+Redistribution and use in source and binary forms, with or
+without modification, are permitted provided that the
+following conditions are met:
+
+1. Redistributions of source code must retain the above
+copyright notice, this list of conditions and the following
+disclaimer.
+
+2. Redistributions in binary form must reproduce the above
+copyright notice, this list of conditions and the following
+disclaimer in the documentation and/or other materials
+provided with the distribution.
+
+3. The end-user documentation included with the
+redistribution, if any, must include the following
+acknowledgment:
+
+   "This product includes software developed by the
+   University of Chicago, as Operator of Argonne National
+   Laboratory.
+
+Alternately, this acknowledgment may appear in the software
+itself, if and wherever such third-party acknowledgments
+normally appear.
+
+4. WARRANTY DISCLAIMER. THE SOFTWARE IS SUPPLIED "AS IS"
+WITHOUT WARRANTY OF ANY KIND. THE COPYRIGHT HOLDER, THE
+UNITED STATES, THE UNITED STATES DEPARTMENT OF ENERGY, AND
+THEIR EMPLOYEES: (1) DISCLAIM ANY WARRANTIES, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO ANY IMPLIED WARRANTIES
+OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, TITLE
+OR NON-INFRINGEMENT, (2) DO NOT ASSUME ANY LEGAL LIABILITY
+OR RESPONSIBILITY FOR THE ACCURACY, COMPLETENESS, OR
+USEFULNESS OF THE SOFTWARE, (3) DO NOT REPRESENT THAT USE OF
+THE SOFTWARE WOULD NOT INFRINGE PRIVATELY OWNED RIGHTS, (4)
+DO NOT WARRANT THAT THE SOFTWARE WILL FUNCTION
+UNINTERRUPTED, THAT IT IS ERROR-FREE OR THAT ANY ERRORS WILL
+BE CORRECTED.
+
+5. LIMITATION OF LIABILITY. IN NO EVENT WILL THE COPYRIGHT
+HOLDER, THE UNITED STATES, THE UNITED STATES DEPARTMENT OF
+ENERGY, OR THEIR EMPLOYEES: BE LIABLE FOR ANY INDIRECT,
+INCIDENTAL, CONSEQUENTIAL, SPECIAL OR PUNITIVE DAMAGES OF
+ANY KIND OR NATURE, INCLUDING BUT NOT LIMITED TO LOSS OF
+PROFITS OR LOSS OF DATA, FOR ANY REASON WHATSOEVER, WHETHER
+SUCH LIABILITY IS ASSERTED ON THE BASIS OF CONTRACT, TORT
+(INCLUDING NEGLIGENCE OR STRICT LIABILITY), OR OTHERWISE,
+EVEN IF ANY OF SAID PARTIES HAS BEEN WARNED OF THE
+POSSIBILITY OF SUCH LOSS OR DAMAGES.
diff --git a/licenses/shrimp b/licenses/shrimp
new file mode 100644
index 000000000000..be557939051a
--- /dev/null
+++ b/licenses/shrimp
@@ -0,0 +1,18 @@
+Redistribution and use in source and binary forms, with or without
+modification, are permitted provided that neither the name of Stephen
+M. Rumble nor the names of any contributors are used to endorse or
+promote products derived from this software without specific prior
+written permission.
+
+THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
+"AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT
+LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR
+A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT
+OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
+SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT
+LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE,
+DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY
+THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
+(INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
+OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
+DAMAGE.
diff --git a/licenses/tm-align b/licenses/tm-align
new file mode 100644
index 000000000000..9c86a443f259
--- /dev/null
+++ b/licenses/tm-align
@@ -0,0 +1,39 @@
+TMalign.f:
+
+This program is to identify the best alignment of two protein
+structures that gives the highest TM-score. Input structures must
+be in the PDB format. By default, TM-score is normalized by the
+second protein. Users can obtain a brief instruction by simply
+running the program without arguments. For comments/suggestions,
+please contact email: zhng@umich.edu.
+
+Reference to cite:
+Yang Zhang, Jeffrey Skolnick, Nucl. Acid Res. 2005 33: 2303-9
+
+Permission to use, copy, modify, and distribute this program for
+any purpose, with or without fee, is hereby granted, provided that
+the notices on the head, the reference information, and this
+copyright notice appear in all copies or substantial portions of
+the Software. It is provided "as is" without express or implied
+warranty.
+
+---
+
+TMscore.f:
+
+This program is to compare two protein structures and identify the
+best superposition that has the highest TM-score. Input structures
+must be in the PDB format. By default, TM-score is normalized by
+the second protein. Users can obtain a brief instruction by simply
+running the program without arguments. For comments/suggestions,
+please contact email: zhng@umich.edu.
+
+Reference:
+Yang Zhang, Jeffrey Skolnick, Proteins, 2004 57:702-10.
+
+Permission to use, copy, modify, and distribute this program for
+any purpose, with or without fee, is hereby granted, provided that
+the notices on the head, the reference information, and this
+copyright notice appear in all copies or substantial portions of
+the Software. It is provided "as is" without express or implied
+warranty.