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authorJustin Lecher <jlec@gentoo.org>2015-05-27 16:18:24 +0000
committerJustin Lecher <jlec@gentoo.org>2015-05-27 16:18:24 +0000
commit4f307a9574dcc3eae2f26b0d609bcd55c6fee4d7 (patch)
treeba91d3124200bce18c5fd8da2adb3c4e415b2d82
parentFix hppa/microblaze/nios2 handling of -pthread/-D_REENTRANT #543114 by Jeroen... (diff)
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Drop old
(Portage version: 2.2.20/cvs/Linux x86_64, signed Manifest commit with key E9402A79B03529A2!)
-rw-r--r--sci-biology/bioperl/ChangeLog5
-rw-r--r--sci-biology/bioperl/bioperl-1.6.0-r2.ebuild69
2 files changed, 4 insertions, 70 deletions
diff --git a/sci-biology/bioperl/ChangeLog b/sci-biology/bioperl/ChangeLog
index f127f3dee815..bc452e6923e4 100644
--- a/sci-biology/bioperl/ChangeLog
+++ b/sci-biology/bioperl/ChangeLog
@@ -1,6 +1,9 @@
# ChangeLog for sci-biology/bioperl
# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioperl/ChangeLog,v 1.58 2015/05/27 10:14:19 ago Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioperl/ChangeLog,v 1.59 2015/05/27 16:18:24 jlec Exp $
+
+ 27 May 2015; Justin Lecher <jlec@gentoo.org> -bioperl-1.6.0-r2.ebuild:
+ Drop old
27 May 2015; Agostino Sarubbo <ago@gentoo.org> bioperl-1.6.9.ebuild:
Stable for amd64, wrt bug #539426
diff --git a/sci-biology/bioperl/bioperl-1.6.0-r2.ebuild b/sci-biology/bioperl/bioperl-1.6.0-r2.ebuild
deleted file mode 100644
index 5e531ecac2ee..000000000000
--- a/sci-biology/bioperl/bioperl-1.6.0-r2.ebuild
+++ /dev/null
@@ -1,69 +0,0 @@
-# Copyright 1999-2014 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioperl/bioperl-1.6.0-r2.ebuild,v 1.6 2014/08/09 22:46:03 zlogene Exp $
-
-EAPI="5"
-
-inherit perl-module
-
-SUBPROJECTS="+db +network +run"
-
-DESCRIPTION="Perl tools for bioinformatics - Core modules"
-HOMEPAGE="http://www.bioperl.org/"
-SRC_URI="http://www.bioperl.org/DIST/BioPerl-${PV}.tar.bz2"
-
-LICENSE="Artistic GPL-2"
-SLOT="0"
-KEYWORDS="amd64 x86"
-IUSE="-minimal graphviz ${SUBPROJECTS}"
-
-CDEPEND="dev-perl/Data-Stag
- dev-perl/libwww-perl
- !minimal? (
- dev-perl/Ace
- dev-perl/Spreadsheet-ParseExcel
- dev-perl/Spreadsheet-WriteExcel
- >=dev-perl/XML-SAX-0.15
- dev-perl/Graph
- dev-perl/SOAP-Lite
- dev-perl/Array-Compare
- dev-perl/SVG
- dev-perl/XML-Simple
- dev-perl/XML-Parser
- dev-perl/XML-Twig
- >=dev-perl/HTML-Parser-3.60
- >=dev-perl/XML-Writer-0.4
- dev-perl/Clone
- dev-perl/XML-DOM
- dev-perl/set-scalar
- dev-perl/XML-XPath
- dev-perl/XML-DOM-XPath
- dev-perl/Algorithm-Munkres
- dev-perl/Data-Stag
- dev-perl/Math-Random
- dev-perl/PostScript
- dev-perl/Convert-Binary-C
- dev-perl/SVG-Graph
- )
- graphviz? ( dev-perl/GraphViz )"
-DEPEND="virtual/perl-Module-Build
- ${CDEPEND}"
-RDEPEND="${CDEPEND}"
-PDEPEND="!minimal? ( dev-perl/Bio-ASN1-EntrezGene )
- db? ( >=sci-biology/bioperl-db-${PV} )
- network? ( >=sci-biology/bioperl-network-${PV} )
- run? ( >=sci-biology/bioperl-run-${PV} )"
-
-S="${WORKDIR}/BioPerl-${PV}"
-
-src_configure() {
- sed -i -e '/add_post_install_script.*symlink_script.pl/d' \
- -e "/'CPAN' *=> *1.81/d" "${S}/Build.PL" || die
- if use minimal && use graphviz; then die "USE flags minimal and graphviz cannot be used together"; fi
- perl-module_src_configure
-}
-
-src_install() {
- mydoc="AUTHORS BUGS FAQ"
- perl-module_src_install
-}