+ JOB=8 + NO_JOBS=16 + [[ ! -n 8 ]] + [[ ! -n 16 ]] + [[ 8 == global ]] + set +x + exec pkgcheck -r gentoo --reporter FancyReporter 'dev-ros/*' 'kde-apps/*' 'sci-biology/*' 'sci-mathematics/*' 'net-p2p/*' 'dev-cpp/*' 'games-strategy/*' 'app-accessibility/*' 'lxde-base/*' 'net-voip/*' -d imlate -d unstable_only -d cleanup -d stale_unstable -d UnusedGlobalFlags -d UnusedLicense --profile-disable-dev --profile-disable-exp WARNING:pkgcore:disabling GLSA checks due to no glsa source being found, and the check not being explicitly enabled; this behaviour may change WARNING pkgcore: metadata.dtd cannot be opened from : /home/mgorny/pull/tmp/metadata/dtd/metadata.dtd, will refetch WARNING pkgcore: metadata.dtd cannot be opened from : /home/mgorny/pull/tmp/metadata/dtd/metadata.dtd, will refetch dev-ros/roslaunch ExecutableFile: "files/roscore.initd" has unnecessary executable bit ExecutableFile: "files/roslaunch.initd" has unnecessary executable bit WARNING pkgcore: metadata.dtd cannot be opened from : /home/mgorny/pull/tmp/metadata/dtd/metadata.dtd, will refetch WARNING pkgcore: metadata.dtd cannot be opened from : /home/mgorny/pull/tmp/metadata/dtd/metadata.dtd, will refetch kde-apps/amor DroppedKeywordWarning: version 15.08.2: keywords dropped: arm, ppc, ppc64 kde-apps/attica DroppedKeywordWarning: version 15.08.2: keywords dropped: arm, ppc, ppc64 kde-apps/audiocd-kio DroppedKeywordWarning: version 15.08.2: keywords dropped: arm, ppc, ppc64 kde-apps/baloo-widgets DroppedKeywordWarning: version 15.08.2: keywords dropped: arm, ppc, ppc64 kde-apps/dolphin NonExistentDeps: version 15.08.2: depset rdepends: nonexistent atoms [ >=kde-apps/thumbnailers-5.9999:5, >=kde-apps/ffmpegthumbs-5.9999:5 ] NonExistentDeps: version 15.08.3: depset rdepends: nonexistent atoms [ >=kde-apps/thumbnailers-5.9999:5, >=kde-apps/ffmpegthumbs-5.9999:5 ] DroppedKeywordWarning: version 15.08.2: keywords dropped: arm, ppc, ppc64 kde-apps/dragon DroppedKeywordWarning: version 15.08.2: keywords dropped: arm, ppc, ppc64 kde-apps/drkonqi DroppedKeywordWarning: version 15.08.2: keywords dropped: arm, ppc, ppc64 kde-apps/ffmpegthumbs DroppedKeywordWarning: version 15.08.2: keywords dropped: arm, ppc, ppc64 kde-apps/juk DroppedKeywordWarning: version 15.08.2: keywords dropped: arm, ppc, ppc64 kde-apps/kate DroppedKeywordWarning: version 15.08.2: keywords dropped: arm, ppc, ppc64 kde-apps/kcmshell DroppedKeywordWarning: version 15.08.2: keywords dropped: arm, ppc, ppc64 kde-apps/kcontrol DroppedKeywordWarning: version 15.08.2: keywords dropped: arm, ppc, ppc64 kde-apps/kcron DroppedKeywordWarning: version 15.08.2: keywords dropped: arm, ppc, ppc64 kde-apps/kde-base-artwork DroppedKeywordWarning: version 15.08.2: keywords dropped: arm, ppc, ppc64 kde-apps/kde-wallpapers DroppedKeywordWarning: version 15.08.2: keywords dropped: arm, ppc, ppc64 kde-apps/kdeadmin-meta DroppedKeywordWarning: version 15.08.2: keywords dropped: arm, ppc, ppc64 kde-apps/kdebase-data DroppedKeywordWarning: version 15.08.2: keywords dropped: arm, ppc, ppc64 kde-apps/kdebase-desktoptheme DroppedKeywordWarning: version 15.08.2: keywords dropped: arm, ppc, ppc64 kde-apps/kdebase-kioslaves DroppedKeywordWarning: version 15.08.2: keywords dropped: arm, ppc, ppc64 kde-apps/kdebase-menu DroppedKeywordWarning: version 15.08.2: keywords dropped: arm, ppc, ppc64 kde-apps/kdebase-menu-icons DroppedKeywordWarning: version 15.08.2: keywords dropped: arm, ppc, ppc64 kde-apps/kdebase-runtime-meta DroppedKeywordWarning: version 15.08.2: keywords dropped: arm, ppc, ppc64 kde-apps/kdebugdialog DroppedKeywordWarning: version 15.08.2: keywords dropped: arm, ppc, ppc64 kde-apps/kdemultimedia-meta DroppedKeywordWarning: version 15.08.2: keywords dropped: arm, ppc, ppc64 kde-apps/kdenetwork-filesharing DroppedKeywordWarning: version 15.08.2: keywords dropped: arm, ppc, ppc64 kde-apps/kdenlive DroppedKeywordWarning: version 15.08.2: keywords dropped: ppc kde-apps/kdepasswd DroppedKeywordWarning: version 15.08.2: keywords dropped: arm, ppc, ppc64 kde-apps/kdesu DroppedKeywordWarning: version 15.08.2: keywords dropped: arm, ppc, ppc64 kde-apps/kdetoys-meta DroppedKeywordWarning: version 15.08.2: keywords dropped: arm, ppc, ppc64 kde-apps/kdialog DroppedKeywordWarning: version 15.08.2: keywords dropped: arm, ppc, ppc64 kde-apps/kdontchangethehostname DroppedKeywordWarning: version 15.08.2: keywords dropped: arm, ppc, ppc64 kde-apps/keditbookmarks DroppedKeywordWarning: version 15.08.2: keywords dropped: arm, ppc, ppc64 kde-apps/keditfiletype DroppedKeywordWarning: version 15.08.2: keywords dropped: arm, ppc, ppc64 kde-apps/kfile DroppedKeywordWarning: version 15.08.2: keywords dropped: arm, ppc, ppc64 kde-apps/kfind DroppedKeywordWarning: version 15.08.2: keywords dropped: arm, ppc, ppc64 kde-apps/kfmclient DroppedKeywordWarning: version 15.08.2: keywords dropped: arm, ppc, ppc64 kde-apps/kget NonExistentDeps: version 15.08.2: depset depends: nonexistent atoms [ >=kde-apps/gpgmepp-4.14.3:4 ] NonExistentDeps: version 15.08.2: depset rdepends: nonexistent atoms [ >=kde-apps/gpgmepp-4.14.3:4 ] NonExistentDeps: version 15.08.3: depset depends: nonexistent atoms [ >=kde-apps/gpgmepp-4.14.3:4 ] NonExistentDeps: version 15.08.3: depset rdepends: nonexistent atoms [ >=kde-apps/gpgmepp-4.14.3:4 ] DroppedKeywordWarning: version 15.08.2: keywords dropped: arm, ppc, ppc64 kde-apps/kglobalaccel DroppedKeywordWarning: version 15.08.2: keywords dropped: arm, ppc, ppc64 kde-apps/kgpg DroppedKeywordWarning: version 15.08.2: keywords dropped: arm, ppc, ppc64 kde-apps/kiconfinder DroppedKeywordWarning: version 15.08.2: keywords dropped: arm, ppc, ppc64 kde-apps/kimgio DroppedKeywordWarning: version 15.08.2: keywords dropped: arm, ppc, ppc64 kde-apps/kioclient DroppedKeywordWarning: version 15.08.2: keywords dropped: arm, ppc, ppc64 kde-apps/kmimetypefinder DroppedKeywordWarning: version 15.08.2: keywords dropped: arm, ppc, ppc64 kde-apps/kmix DroppedKeywordWarning: version 15.08.2: keywords dropped: arm, ppc, ppc64 kde-apps/knetattach DroppedKeywordWarning: version 15.08.2: keywords dropped: arm, ppc, ppc64 kde-apps/knewstuff DroppedKeywordWarning: version 15.08.2: keywords dropped: arm, ppc, ppc64 kde-apps/knotify DroppedKeywordWarning: version 15.08.2: keywords dropped: arm, ppc, ppc64 kde-apps/konq-plugins DroppedKeywordWarning: version 15.08.2: keywords dropped: arm, ppc, ppc64 kde-apps/konqueror DroppedKeywordWarning: version 15.08.2: keywords dropped: arm, ppc, ppc64 kde-apps/konsole DroppedKeywordWarning: version 15.08.2: keywords dropped: arm, ppc, ppc64 kde-apps/kopete DroppedKeywordWarning: version 15.08.2: keywords dropped: arm, ppc, ppc64 kde-apps/kpasswdserver DroppedKeywordWarning: version 15.08.2: keywords dropped: arm, ppc, ppc64 kde-apps/kppp DroppedKeywordWarning: version 15.08.2: keywords dropped: ppc, ppc64 kde-apps/kquitapp DroppedKeywordWarning: version 15.08.2: keywords dropped: arm, ppc, ppc64 kde-apps/krdc DroppedKeywordWarning: version 15.08.2: keywords dropped: arm, ppc, ppc64 kde-apps/kreadconfig DroppedKeywordWarning: version 15.08.2: keywords dropped: arm, ppc, ppc64 kde-apps/krfb DroppedKeywordWarning: version 15.08.2: keywords dropped: arm, ppc, ppc64 kde-apps/kscd DroppedKeywordWarning: version 15.08.2: keywords dropped: arm, ppc, ppc64 kde-apps/kstart DroppedKeywordWarning: version 15.08.2: keywords dropped: arm, ppc, ppc64 kde-apps/ksystemlog DroppedKeywordWarning: version 15.08.2: keywords dropped: arm, ppc, ppc64 kde-apps/ktimezoned DroppedKeywordWarning: version 15.08.2: keywords dropped: arm, ppc, ppc64 kde-apps/ktraderclient DroppedKeywordWarning: version 15.08.2: keywords dropped: arm, ppc, ppc64 kde-apps/ktux DroppedKeywordWarning: version 15.08.2: keywords dropped: arm, ppc, ppc64 kde-apps/kuiserver DroppedKeywordWarning: version 15.08.2: keywords dropped: arm, ppc, ppc64 kde-apps/kurifilter-plugins DroppedKeywordWarning: version 15.08.2: keywords dropped: arm, ppc, ppc64 kde-apps/kuser DroppedKeywordWarning: version 15.08.2: keywords dropped: arm, ppc, ppc64 kde-apps/kwalletd NonExistentDeps: version 15.08.2: depset depends: nonexistent atoms [ >=kde-apps/gpgmepp-4.14.3:4 ] NonExistentDeps: version 15.08.2: depset rdepends: nonexistent atoms [ >=kde-apps/gpgmepp-4.14.3:4 ] NonExistentDeps: version 15.08.3: depset depends: nonexistent atoms [ >=kde-apps/gpgmepp-4.14.3:4 ] NonExistentDeps: version 15.08.3: depset rdepends: nonexistent atoms [ >=kde-apps/gpgmepp-4.14.3:4 ] DroppedKeywordWarning: version 15.08.2: keywords dropped: arm, ppc, ppc64 SizeViolation: "files/kwalletd-4.14.3-CVE-2013-7252.patch" exceeds 20k in size; 21806 bytes total kde-apps/kwrite DroppedKeywordWarning: version 15.08.2: keywords dropped: arm, ppc, ppc64 kde-apps/libkcddb DroppedKeywordWarning: version 15.08.2: keywords dropped: arm, ppc, ppc64 kde-apps/libkcompactdisc DroppedKeywordWarning: version 15.08.2: keywords dropped: arm, ppc, ppc64 kde-apps/libkdcraw DroppedKeywordWarning: version 15.08.2: keywords dropped: arm, ppc, ppc64 kde-apps/libkexiv2 DroppedKeywordWarning: version 15.08.2: keywords dropped: arm, ppc, ppc64 kde-apps/libkface NoFinalNewline: version 15.08.3: ebuild lacks an ending newline kde-apps/libkipi DroppedKeywordWarning: version 15.08.2-r1: keywords dropped: arm, ppc, ppc64 kde-apps/libkonq DroppedKeywordWarning: version 15.08.2: keywords dropped: arm, ppc, ppc64 kde-apps/mplayerthumbs DroppedKeywordWarning: version 15.08.2: keywords dropped: arm, ppc, ppc64 kde-apps/nsplugins DroppedKeywordWarning: version 15.08.2: keywords dropped: arm, ppc, ppc64 kde-apps/pairs DroppedKeywordWarning: version 15.04.3: keywords dropped: arm, ppc, ppc64 kde-apps/phonon-kde DroppedKeywordWarning: version 15.08.2: keywords dropped: arm, ppc, ppc64 kde-apps/plasma-apps DroppedKeywordWarning: version 15.08.2: keywords dropped: arm, ppc, ppc64 kde-apps/plasma-runtime DroppedKeywordWarning: version 15.08.2: keywords dropped: arm, ppc, ppc64 kde-apps/renamedlg-plugins DroppedKeywordWarning: version 15.08.2: keywords dropped: arm, ppc, ppc64 kde-apps/solid-runtime DroppedKeywordWarning: version 15.08.2: keywords dropped: arm, ppc, ppc64 kde-apps/zeroconf-ioslave DroppedKeywordWarning: version 15.08.2: keywords dropped: arm, ppc, ppc64 WARNING pkgcore: metadata.dtd cannot be opened from : /home/mgorny/pull/tmp/metadata/dtd/metadata.dtd, will refetch WARNING pkgcore: metadata.dtd cannot be opened from : /home/mgorny/pull/tmp/metadata/dtd/metadata.dtd, will refetch sci-biology/aaindex DeprecatedEAPI: version 9.1: uses deprecated EAPI: 0 sci-biology/abyss DeprecatedEAPI: version 1.3.3: uses deprecated EAPI: 4 sci-biology/allpathslg DeprecatedEAPI: version 42337: uses deprecated EAPI: 4 sci-biology/amap DeprecatedEAPI: version 2.2-r2: uses deprecated EAPI: 2 sci-biology/amos DeprecatedEAPI: version 3.1.0: uses deprecated EAPI: 4 sci-biology/arb DeprecatedEAPI: version 5.1-r1: uses deprecated EAPI: 2 DeprecatedEAPI: version 5.2: uses deprecated EAPI: 4 DeprecatedEAPI: version 5.3: uses deprecated EAPI: 4 sci-biology/ariadne DeprecatedEAPI: version 1.3-r1: uses deprecated EAPI: 0 DeprecatedEAPI: version 1.3-r2: uses deprecated EAPI: 4 sci-biology/augustus DeprecatedEAPI: version 2.5.5: uses deprecated EAPI: 4 sci-biology/bamtools DeprecatedEAPI: version 1.0.2: uses deprecated EAPI: 4 sci-biology/beast-mcmc DeprecatedEAPI: version 9999: uses deprecated EAPI: 2 sci-biology/bedtools DeprecatedEAPI: version 2.16.2: uses deprecated EAPI: 4 DeprecatedEAPI: version 2.20.1: uses deprecated EAPI: 4 sci-biology/biogrep DeprecatedEAPI: version 1.0: uses deprecated EAPI: 0 DeprecatedEAPI: version 1.0-r1: uses deprecated EAPI: 3 sci-biology/biojava DeprecatedEAPI: version 1.6: uses deprecated EAPI: 2 DeprecatedEAPI: version 1.7: uses deprecated EAPI: 2 sci-biology/bioperl DeprecatedEclass: version 9999-r1: uses deprecated eclass(es): [ git-2 (migrate to git-r3) ] sci-biology/bioperl-db DeprecatedEclass: version 9999-r1: uses deprecated eclass(es): [ git-2 (migrate to git-r3) ] sci-biology/bioperl-network DeprecatedEclass: version 9999-r1: uses deprecated eclass(es): [ git-2 (migrate to git-r3) ] sci-biology/bioperl-run DeprecatedEclass: version 9999-r1: uses deprecated eclass(es): [ git-2 (migrate to git-r3) ] sci-biology/bioruby DeprecatedEclass: version 9999: uses deprecated eclass(es): [ git-2 (migrate to git-r3) ] sci-biology/biosql DeprecatedEAPI: version 1.0.1: uses deprecated EAPI: 0 sci-biology/blat DeprecatedEAPI: version 34: uses deprecated EAPI: 0 DeprecatedEAPI: version 34-r1: uses deprecated EAPI: 4 sci-biology/blossoc DeprecatedEAPI: version 1.4.0: uses deprecated EAPI: 2 sci-biology/bowtie DeprecatedEAPI: version 0.12.8: uses deprecated EAPI: 4 sci-biology/cd-hit DeprecatedEAPI: version 4.5.1: uses deprecated EAPI: 3 DeprecatedEAPI: version 4.5.4: uses deprecated EAPI: 4 DeprecatedEAPI: version 4.6: uses deprecated EAPI: 4 sci-biology/clustalw DeprecatedEAPI: version 2.1: uses deprecated EAPI: 4 DroppedKeywordWarning: version 2.1: keywords dropped: alpha, ppc, ppc64, sparc sci-biology/clustalw-mpi DeprecatedEAPI: version 0.13-r1: uses deprecated EAPI: 4 sci-biology/consed DeprecatedEAPI: version 19-r2: uses deprecated EAPI: 3 MissingChksum: version 19-r2: "consed-19-sources.tar.gz" missing required chksums: sha512, whirlpool; has chksums: sha256, size MissingChksum: version 19-r2: "consed-19-linux.tar.gz" missing required chksums: sha512, whirlpool; has chksums: sha256, size sci-biology/cufflinks SizeViolation: "files/cufflinks-1.3.0-boost.patch" exceeds 20k in size; 52005 bytes total sci-biology/elph DeprecatedEAPI: version 0.1.5: uses deprecated EAPI: 0 DeprecatedEAPI: version 1.0.1: uses deprecated EAPI: 0 sci-biology/exonerate DeprecatedEAPI: version 2.2.0-r1: uses deprecated EAPI: 4 sci-biology/express DeprecatedEAPI: version 0.9.5: uses deprecated EAPI: 4 sci-biology/fasta DeprecatedEAPI: version 35.4.10: uses deprecated EAPI: 2 sci-biology/foldingathome DeprecatedEAPI: version 7.3.6-r2: uses deprecated EAPI: 4 DeprecatedEAPI: version 7.4.4: uses deprecated EAPI: 4 sci-biology/gatk DeprecatedEclass: version 9999: uses deprecated eclass(es): [ git-2 (migrate to git-r3) ] sci-biology/gibbs DeprecatedEAPI: version 3.1: uses deprecated EAPI: 4 sci-biology/glimmerhmm DeprecatedEAPI: version 3.0.1-r1: uses deprecated EAPI: 4 sci-biology/gmap DeprecatedEAPI: version 2011.10.07: uses deprecated EAPI: 2 DeprecatedEAPI: version 2012.07.20: uses deprecated EAPI: 4 sci-biology/goby DeprecatedEAPI: version 1.9.7.3: uses deprecated EAPI: 4 DeprecatedEAPI: version 1.9.8.1: uses deprecated EAPI: 4 sci-biology/goby-cpp DeprecatedEAPI: version 1.9.7.3: uses deprecated EAPI: 4 DeprecatedEAPI: version 1.9.8.1: uses deprecated EAPI: 4 SizeViolation: "files/Alignments.proto" exceeds 20k in size; 26192 bytes total sci-biology/hmmer DeprecatedEAPI: version 2.3.2-r1: uses deprecated EAPI: 0 NonExistentDeps: version 2.3.2-r1: depset depends: nonexistent atoms [ sys-cluster/pvm ] NonExistentDeps: version 2.3.2-r1: depset rdepends: nonexistent atoms [ sys-cluster/pvm ] DeprecatedEAPI: version 2.3.2-r2: uses deprecated EAPI: 0 NonExistentDeps: version 2.3.2-r2: depset depends: nonexistent atoms [ sys-cluster/pvm ] NonExistentDeps: version 2.3.2-r2: depset rdepends: nonexistent atoms [ sys-cluster/pvm ] DeprecatedEAPI: version 3.0: uses deprecated EAPI: 4 DroppedKeywordWarning: version 3.0: keywords dropped: alpha, ia64, ppc, ppc64, sparc sci-biology/iedera DeprecatedEAPI: version 1.04: uses deprecated EAPI: 2 sci-biology/infernal DeprecatedEAPI: version 1.0.2-r1: uses deprecated EAPI: 4 sci-biology/iqpnni DeprecatedEAPI: version 3.2: uses deprecated EAPI: 0 DeprecatedEAPI: version 3.3.1: uses deprecated EAPI: 0 DeprecatedEAPI: version 3.3.2: uses deprecated EAPI: 4 sci-biology/kalign DeprecatedEAPI: version 2.03: uses deprecated EAPI: 0 DeprecatedEAPI: version 2.03-r1: uses deprecated EAPI: 4 sci-biology/lagan DeprecatedEAPI: version 2.0-r1: uses deprecated EAPI: 2 DeprecatedEAPI: version 2.0-r2: uses deprecated EAPI: 2 sci-biology/last DeprecatedEAPI: version 230: uses deprecated EAPI: 4 sci-biology/mammoth MissingChksum: version 1.0-r1: "mammoth-1.0-src.tgz" missing required chksums: sha512, whirlpool; has chksums: sha256, size sci-biology/maq DeprecatedEAPI: version 0.7.1: uses deprecated EAPI: 0 DeprecatedEAPI: version 0.7.1-r1: uses deprecated EAPI: 4 sci-biology/mauve DeprecatedEAPI: version 9999: uses deprecated EAPI: 2 sci-biology/mauvealigner DeprecatedEAPI: version 9999: uses deprecated EAPI: 2 sci-biology/mcl DeprecatedEAPI: version 08.312: uses deprecated EAPI: 4 DeprecatedEAPI: version 12.135: uses deprecated EAPI: 4 sci-biology/meme DeprecatedEAPI: version 4.8.1-r2: uses deprecated EAPI: 4 DeprecatedEclass: version 4.8.1-r2: uses deprecated eclass(es): [ python (migrate to python-r1 / python-single-r1 / python-any-r1) ] sci-biology/mosaik DeprecatedEAPI: version 1.0.1367: uses deprecated EAPI: 2 DeprecatedEAPI: version 1.0.1388: uses deprecated EAPI: 2 sci-biology/mrbayes DeprecatedEAPI: version 3.1.2-r1: uses deprecated EAPI: 4 sci-biology/mummer DeprecatedEAPI: version 3.20: uses deprecated EAPI: 0 DeprecatedEAPI: version 3.21: uses deprecated EAPI: 0 DeprecatedEAPI: version 3.22-r1: uses deprecated EAPI: 3 sci-biology/newick-utils DeprecatedEAPI: version 1.3.0: uses deprecated EAPI: 2 DeprecatedEAPI: version 1.5.0: uses deprecated EAPI: 2 sci-biology/njplot DeprecatedEAPI: version 2.3: uses deprecated EAPI: 2 sci-biology/pals DeprecatedEAPI: version 1.0: uses deprecated EAPI: 2 sci-biology/phrap MissingChksum: version 1.080812-r1: "phrap-1.080812-distrib.tar.gz" missing required chksums: sha512, whirlpool; has chksums: sha256, size sci-biology/phred DeprecatedEAPI: version 071220: uses deprecated EAPI: 0 MissingChksum: version 071220: "phred-dist-071220.b-acd.tar.gz" missing required chksums: sha512, whirlpool; has chksums: sha256, size sci-biology/phyml DeprecatedEAPI: version 2.4.5-r2: uses deprecated EAPI: 2 sci-biology/piler DeprecatedEAPI: version 1.0: uses deprecated EAPI: 2 sci-biology/pilercr DeprecatedEAPI: version 1.0: uses deprecated EAPI: 4 sci-biology/plink DeprecatedEAPI: version 1.07-r1: uses deprecated EAPI: 4 sci-biology/prank DeprecatedEAPI: version 100701: uses deprecated EAPI: 4 DeprecatedEAPI: version 111130: uses deprecated EAPI: 4 DeprecatedEAPI: version 140603: uses deprecated EAPI: 4 sci-biology/prints DeprecatedEAPI: version 39.0: uses deprecated EAPI: 0 sci-biology/prodigal DeprecatedEAPI: version 2.50: uses deprecated EAPI: 2 DeprecatedEAPI: version 2.60: uses deprecated EAPI: 2 sci-biology/prosite DeprecatedEAPI: version 19.36: uses deprecated EAPI: 0 DeprecatedEAPI: version 20.36: uses deprecated EAPI: 0 DeprecatedEAPI: version 20.52: uses deprecated EAPI: 0 DeprecatedEAPI: version 20.72: uses deprecated EAPI: 0 sci-biology/psipred DeprecatedEAPI: version 3.1: uses deprecated EAPI: 3 NonExistentDeps: version 3.1: depset rdepends: nonexistent atoms [ sci-biology/ncbi-tools++ ] DeprecatedEAPI: version 3.2: uses deprecated EAPI: 3 NonExistentDeps: version 3.2: depset rdepends: nonexistent atoms [ sci-biology/ncbi-tools++ ] DeprecatedEAPI: version 3.2.1: uses deprecated EAPI: 4 NonExistentDeps: version 3.2.1: depset rdepends: nonexistent atoms [ sci-biology/ncbi-tools++ ] DeprecatedEAPI: version 3.3: uses deprecated EAPI: 4 NonExistentDeps: version 3.3: depset rdepends: nonexistent atoms [ sci-biology/ncbi-tools++ ] NonExistentDeps: version 3.4: depset rdepends: nonexistent atoms [ sci-biology/ncbi-tools++ ] NonExistentDeps: version 3.5: depset rdepends: nonexistent atoms [ sci-biology/ncbi-tools++ ] sci-biology/qrna DeprecatedEAPI: version 2.0.3c-r1: uses deprecated EAPI: 4 sci-biology/recon DeprecatedEAPI: version 1.06-r1: uses deprecated EAPI: 4 DeprecatedEAPI: version 1.06-r2: uses deprecated EAPI: 4 sci-biology/rmblast SizeViolation: "files/rmblast-1.2-gcc47.patch" exceeds 20k in size; 31795 bytes total sci-biology/rnaview DeprecatedEAPI: version 20040713: uses deprecated EAPI: 0 DeprecatedEAPI: version 20040713-r2: uses deprecated EAPI: 2 DeprecatedEAPI: version 20040713-r3: uses deprecated EAPI: 4 sci-biology/samtools DeprecatedEAPI: version 0.1.12: uses deprecated EAPI: 2 sci-biology/shrimp DeprecatedEAPI: version 2.0.1: uses deprecated EAPI: 4 sci-biology/sim4 DeprecatedEAPI: version 20030921: uses deprecated EAPI: 0 DeprecatedEAPI: version 20030921-r1: uses deprecated EAPI: 0 sci-biology/snpfile DeprecatedEAPI: version 2.0.1: uses deprecated EAPI: 2 DeprecatedEAPI: version 2.0.1-r1: uses deprecated EAPI: 4 sci-biology/tophat DeprecatedEAPI: version 1.0.12: uses deprecated EAPI: 2 DeprecatedEAPI: version 1.4.1: uses deprecated EAPI: 4 DeprecatedEAPI: version 2.0.0: uses deprecated EAPI: 4 DeprecatedEAPI: version 2.0.2: uses deprecated EAPI: 4 sci-biology/transfac DeprecatedEAPI: version 3.2: uses deprecated EAPI: 0 sci-biology/tree-puzzle DeprecatedEAPI: version 5.2: uses deprecated EAPI: 4 sci-biology/treeviewx DeprecatedEAPI: version 0.5.1-r2: uses deprecated EAPI: 2 sci-biology/trf DeprecatedEAPI: version 4.04: uses deprecated EAPI: 4 sci-biology/trnascan-se DeprecatedEAPI: version 1.23-r2: uses deprecated EAPI: 3 sci-biology/uchime DeprecatedEAPI: version 4.2.40: uses deprecated EAPI: 4 sci-biology/unafold DeprecatedEAPI: version 3.8: uses deprecated EAPI: 3 sci-biology/velvet DeprecatedEAPI: version 1.0.18-r1: uses deprecated EAPI: 4 sci-biology/wgs-assembler DeprecatedEAPI: version 5.4: uses deprecated EAPI: 2 DeprecatedEAPI: version 6.1: uses deprecated EAPI: 2 DeprecatedEAPI: version 7.0: uses deprecated EAPI: 2 DeprecatedEAPI: version 7.0-r1: uses deprecated EAPI: 4 DeprecatedEclass: version 7.0-r1: uses deprecated eclass(es): [ python (migrate to python-r1 / python-single-r1 / python-any-r1) ] sci-biology/wise SizeViolation: "files/wise-2.4.0_alpha-cflags.patch" exceeds 20k in size; 27241 bytes total sci-biology/yass DeprecatedEAPI: version 1.14: uses deprecated EAPI: 2 DeprecatedEAPI: version 1.14-r1: uses deprecated EAPI: 2 WARNING pkgcore: metadata.dtd cannot be opened from : /home/mgorny/pull/tmp/metadata/dtd/metadata.dtd, will refetch WARNING pkgcore: metadata.dtd cannot be opened from : /home/mgorny/pull/tmp/metadata/dtd/metadata.dtd, will refetch sci-mathematics/axiom DeprecatedEAPI: version 200805: uses deprecated EAPI: 4 sci-mathematics/cado-nfs DeprecatedEAPI: version 1.1: uses deprecated EAPI: 4 DeprecatedEAPI: version 2.0: uses deprecated EAPI: 4 DeprecatedEAPI: version 2.1: uses deprecated EAPI: 4 DeprecatedEAPI: version 2.1.1: uses deprecated EAPI: 4 sci-mathematics/calc DeprecatedEAPI: version 2.12.1.5: uses deprecated EAPI: 0 DeprecatedEAPI: version 2.12.2.2: uses deprecated EAPI: 0 DeprecatedEAPI: version 2.12.4.3: uses deprecated EAPI: 3 DeprecatedEAPI: version 2.12.4.4: uses deprecated EAPI: 4 sci-mathematics/diagrtb DeprecatedEAPI: version 2.64: uses deprecated EAPI: 4 sci-mathematics/drgeo DeprecatedEAPI: version 1.1.0: uses deprecated EAPI: 4 NonExistentDeps: version 1.1.0: depset depends: nonexistent atoms [ =dev-scheme/guile-1.6* ] NonExistentDeps: version 1.1.0: depset rdepends: nonexistent atoms [ =dev-scheme/guile-1.6* ] sci-mathematics/factmsieve DeprecatedEAPI: version 76: uses deprecated EAPI: 4 NonExistentDeps: version 76: depset rdepends: nonexistent atoms [ dev-lang/python:2.6 ] sci-mathematics/fann DeprecatedEAPI: version 2.1.0_beta-r1: uses deprecated EAPI: 2 DeprecatedEclass: version 2.1.0_beta-r1: uses deprecated eclass(es): [ python (migrate to python-r1 / python-single-r1 / python-any-r1) ] DeprecatedEAPI: version 2.2.0: uses deprecated EAPI: 4 sci-mathematics/flint DroppedKeywordWarning: version 2.4.5: keywords dropped: ppc sci-mathematics/frobby DeprecatedEAPI: version 0.9.0-r1: uses deprecated EAPI: 4 sci-mathematics/gfan DeprecatedEAPI: version 0.5: uses deprecated EAPI: 3 sci-mathematics/gimps DeprecatedEAPI: version 28.7: uses deprecated EAPI: 4 sci-mathematics/ginac DeprecatedEAPI: version 1.5.8: uses deprecated EAPI: 2 DeprecatedEAPI: version 1.6.1: uses deprecated EAPI: 4 sci-mathematics/glpk DeprecatedEAPI: version 4.45: uses deprecated EAPI: 2 DroppedKeywordWarning: version 4.54: keywords dropped: alpha sci-mathematics/gmm DeprecatedEAPI: version 4.2: uses deprecated EAPI: 4 sci-mathematics/gmp-ecm DeprecatedEAPI: version 6.4.3-r5: uses deprecated EAPI: 4 sci-mathematics/gsl-shell DeprecatedEAPI: version 2.2.0: uses deprecated EAPI: 4 sci-mathematics/gwnum DeprecatedEAPI: version 277: uses deprecated EAPI: 4 sci-mathematics/isabelle DeprecatedEAPI: version 2011.1: uses deprecated EAPI: 4 sci-mathematics/lpsolve DeprecatedEAPI: version 5.5.2.0: uses deprecated EAPI: 4 sci-mathematics/lybniz DeprecatedEAPI: version 1.3.2: uses deprecated EAPI: 3 DeprecatedEclass: version 1.3.2: uses deprecated eclass(es): [ distutils (migrate to distutils-r1), python (migrate to python-r1 / python-single-r1 / python-any-r1) ] sci-mathematics/mathomatic DeprecatedEAPI: version 15.8.5: uses deprecated EAPI: 4 DeprecatedEAPI: version 16.0.1: uses deprecated EAPI: 4 DeprecatedEAPI: version 16.0.5: uses deprecated EAPI: 4 sci-mathematics/minisat DeprecatedEAPI: version 2.1.0: uses deprecated EAPI: 2 DeprecatedEAPI: version 2.2.0-r3: uses deprecated EAPI: 2 sci-mathematics/nestedsums DeprecatedEAPI: version 1.4.12-r1: uses deprecated EAPI: 3 sci-mathematics/num-utils DeprecatedEAPI: version 0.3: uses deprecated EAPI: 0 DeprecatedEAPI: version 0.5-r1: uses deprecated EAPI: 4 sci-mathematics/nusmv DeprecatedEAPI: version 2.3.1: uses deprecated EAPI: 0 DeprecatedEAPI: version 2.5.0: uses deprecated EAPI: 0 DeprecatedEAPI: version 2.5.2: uses deprecated EAPI: 0 DeprecatedEAPI: version 2.5.3: uses deprecated EAPI: 0 DeprecatedEAPI: version 2.5.4: uses deprecated EAPI: 0 sci-mathematics/octave DroppedKeywordWarning: version 3.8.1: keywords dropped: arm sci-mathematics/octave-epstk DeprecatedEAPI: version 2.3: uses deprecated EAPI: 2 DeprecatedEAPI: version 2.4: uses deprecated EAPI: 4 sci-mathematics/otter DeprecatedEAPI: version 3.3-r1: uses deprecated EAPI: 0 DeprecatedEAPI: version 3.3-r2: uses deprecated EAPI: 4 sci-mathematics/pari DeprecatedEAPI: version 2.3.5: uses deprecated EAPI: 3 DeprecatedEAPI: version 2.5.0-r3: uses deprecated EAPI: 4 DeprecatedEAPI: version 2.5.1: uses deprecated EAPI: 4 DeprecatedEAPI: version 2.5.1-r1: uses deprecated EAPI: 4 DeprecatedEAPI: version 2.5.2: uses deprecated EAPI: 4 DeprecatedEAPI: version 2.5.3: uses deprecated EAPI: 4 SizeViolation: "files/pari-2.5.4-polred.patch" exceeds 20k in size; 23409 bytes total sci-mathematics/pari-data DeprecatedEAPI: version 20120726: uses deprecated EAPI: 4 sci-mathematics/prng DeprecatedEAPI: version 3.0.2: uses deprecated EAPI: 4 sci-mathematics/pymc DeprecatedEAPI: version 2.2: uses deprecated EAPI: 4 DeprecatedEclass: version 2.2: uses deprecated eclass(es): [ distutils (migrate to distutils-r1), python (migrate to python-r1 / python-single-r1 / python-any-r1) ] DeprecatedEAPI: version 9999: uses deprecated EAPI: 4 DeprecatedEclass: version 9999: uses deprecated eclass(es): [ distutils (migrate to distutils-r1), git-2 (migrate to git-r3), python (migrate to python-r1 / python-single-r1 / python-any-r1) ] sci-mathematics/qtoctave NonExistentDeps: version 0.10.1-r1: depset depends: nonexistent atoms [