Version Bump, fixes problems with format security, #542666

Package-Manager: portage-2.2.18/cvs/Linux x86_64
Manifest-Sign-Key: 0xB9D4F231BD1558AB!

4 files changed, 78 insertions, 16 deletions

diff --git a/sci-mathematics/nauty/ChangeLog b/sci-mathematics/nauty/ChangeLog
index 166df2033dea..84478a6be253 100644
--- a/sci-mathematics/nauty/ChangeLog
+++ b/sci-mathematics/nauty/ChangeLog
@@ -1,6 +1,12 @@
 # ChangeLog for sci-mathematics/nauty
-# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-mathematics/nauty/ChangeLog,v 1.5 2014/08/10 20:23:44 slyfox Exp $
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-mathematics/nauty/ChangeLog,v 1.6 2015/03/09 10:29:25 jlec Exp $
+
+*nauty-2.5.9 (09 Mar 2015)
+
+  09 Mar 2015; Justin Lecher <jlec@gentoo.org> +nauty-2.5.9.ebuild,
+  metadata.xml:
+  Version Bump, fixes problems with format security, #542666
 
   10 Aug 2014; Sergei Trofimovich <slyfox@gentoo.org> nauty-2.4.2.ebuild:
   QA: drop trailing '.' from DESCRIPTION
diff --git a/sci-mathematics/nauty/Manifest b/sci-mathematics/nauty/Manifest
index 3c00758a4617..3d8ec2457064 100644
--- a/sci-mathematics/nauty/Manifest
+++ b/sci-mathematics/nauty/Manifest
@@ -1,14 +1,28 @@
 -----BEGIN PGP SIGNED MESSAGE-----
-Hash: SHA256
+Hash: SHA512
 
-DIST nauty24r2.tar.gz 720754 SHA256 760f9cca43b8eb7dd083983ea0e137125ee8a181d460c970137cfb7490fe1621
+DIST nauty24r2.tar.gz 720754 SHA256 760f9cca43b8eb7dd083983ea0e137125ee8a181d460c970137cfb7490fe1621 SHA512 19b998e0e385ee2b111b7085f64ab28c8d985337a097407c14dc7d5f1b279e1176e3e708f282d82f8364ef77562c0f978f00b3f965501f528ebedbe9bf7c5545 WHIRLPOOL 1fc9fc228274181bf3fb26b53d2e6e7faef0431e5ce90b631c65437ae103afeaee879d78051548dcad1da58410c2d357fee0912cc7f14b8764cc605423677e15
+DIST nauty25r9.tar.gz 1007323 SHA256 602d0e2e5ab1bdc84ab69f75ebc065833501bd2875cb07b1bb4274e3dd632825 SHA512 79f9054f1d39406063f4cbab61002b27f260b93fd37d6346efdfcd113c59ebab54320e6e7b6cdf26c7eddc376e4ad558e2cd4e6071d418dce2a6918f3c8f7ca2 WHIRLPOOL 0dcce5a74ac5874c5a510cd0d302b5d73897ee3cfaa208945de464e057a4b0af2ba4e717e8d331c51d5065d45363a339e0cd746a0a8fda179ec616b1443e2f63
 EBUILD nauty-2.4.2.ebuild 1116 SHA256 7e669935b2091c2679ed2ecea8f14e898a231780b6b831f858a660199edec274 SHA512 9168030952b9c251489287aa03fe3ea1da75844d091ae4ec9b3b08e78d2337d3a496c8df09024d04329eb5431fae8d752367d8830570150e77893f8d968b6444 WHIRLPOOL 06643de33e860f7361cd23f053fd41d871e0f01e5ee83ae85ecd614cc61ddbaaee7a3031fa5f22e70d3baa550391ad788e8a587be0723a5f8983d3539f6a1c12
-MISC ChangeLog 870 SHA256 4c560c77236996ed390285482eed475b1d7737e998a9d2f40ce7106094452a4c SHA512 0846e255f52e79fa9241e55d839b8afc9da9b1b568113fc9a73b554e85d10748c761004478ee07afd426453bd6dd78d37df232cb727f8d2a1512311016c7f99c WHIRLPOOL b669629f6f7745d5d78bdedcec764b66dfc51b73c2563fc3c1dee92615e8e740bcd197eaa48dceb8f89319adc395d4428a757569eb4c4e7b537a98ebe26242d0
-MISC metadata.xml 525 SHA256 c9ca2c2d58578f5b40c214ea51bc2f5749148c85beb8e630ddc5c72822d59574 SHA512 f6930b1033c1c6ca83b126a25d65d6f61b930c09f86d15d1244cfd661575c66188ef69b904616a07d81f33f44f140e8296bda3ddc36e1954adbacdfb0866fcd3 WHIRLPOOL 00a56e6cfa0e28015a2a0d28502d13d1d8d3ee6051c39bf022641a0f4a3bef211aee2f80d8feb6aacfa84ce18669b2030ac9c26d81c4267b60a160c6886ff8f0
+EBUILD nauty-2.5.9.ebuild 1055 SHA256 92aee84cce3d51ad3a5267a60a0f017269b881055c37a4103d31126042ffdb1b SHA512 4f343c4bde44bf35934db4047cfcdc4e0546e793d3b3654184dc16c6df44747c13f59a7b7a4b28673753f343d61cfc5b2bec28811bedb0dd0687dac21ff114ee WHIRLPOOL 943b2952e92fc2515e4b1112d51e7e6d60272572655228c7b1d37f13f797cd2bd30e2da1d53f2c4f1878bb070ce00b9efde13d76326fd26edb9afb63db78224f
+MISC ChangeLog 1042 SHA256 80b4fa833cfb1b9923b9061d833c0e3dcb76b4c5d445339975dda677b0575190 SHA512 256c599f3ea6de17159097aa4640b6e36556295bcac87d52109954d95b9a9427c96a79911539adfc15b374b1493f460cc0c5966ccc5307bc8762ce8b36a3d9f5 WHIRLPOOL 29abcfa11bdd4018c2ed55e4655ec7e8113b1766b0e77c3e6ced2c19c96d34d45aa853b9fd2e99c60c37cc80a2d7e3befd4da7c53bf80e1d3294c9287fa0f9dd
+MISC metadata.xml 537 SHA256 580a71a48538d9677d11a560ecd5e5bb45a643f48af32818a14c53c6e28132a2 SHA512 4747ef2880c0f4c264df7aca8e98bb3c34500fcd81d8595d7a58019c892e2fdd8a5d6627e5210c0d0cd3f172093f233227289c1220abe18a69dbbfd0e8f7631b WHIRLPOOL 5ec281fac395d0df3732f1d08f02654abad6e971cdf6d2c1fe3a082d06422d475f70f19d3b2eecf98adc6837838c8a8a40e13c33c947f8a1fbfb286b19029ec9
 -----BEGIN PGP SIGNATURE-----
-Version: GnuPG v2
+Version: GnuPG v2.0
 
-iEYEAREIAAYFAlPn1NEACgkQcaHudmEf86om0ACfVmrV5JzAUjuP7v4rNiHn9WdY
-ig0An1cd+W0NjsVG4TPNqA6Rp9w+ft9L
-=QKC+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+=F/uB
 -----END PGP SIGNATURE-----
diff --git a/sci-mathematics/nauty/metadata.xml b/sci-mathematics/nauty/metadata.xml
index 0c5be24442aa..186d7a91db3c 100644
--- a/sci-mathematics/nauty/metadata.xml
+++ b/sci-mathematics/nauty/metadata.xml
@@ -1,12 +1,12 @@
 <?xml version="1.0" encoding="UTF-8"?>
 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
 <pkgmetadata>
-<maintainer>
-  <email>tomka@gentoo.org</email>
-  <name>Thomas Kahle</name>
-</maintainer>
-<herd>sci-mathematics</herd>
-<longdescription lang="en">
+  <maintainer>
+    <email>tomka@gentoo.org</email>
+    <name>Thomas Kahle</name>
+  </maintainer>
+  <herd>sci-mathematics</herd>
+  <longdescription lang="en">
 nauty is a program for computing automorphism groups of graphs and digraphs. It can also produce a
 canonical labelling.
 
diff --git a/sci-mathematics/nauty/nauty-2.5.9.ebuild b/sci-mathematics/nauty/nauty-2.5.9.ebuild
new file mode 100644
index 000000000000..fd11ad7114d3
--- /dev/null
+++ b/sci-mathematics/nauty/nauty-2.5.9.ebuild
@@ -0,0 +1,42 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-mathematics/nauty/nauty-2.5.9.ebuild,v 1.1 2015/03/09 10:29:25 jlec Exp $
+
+EAPI=5
+
+inherit versionator
+
+MY_PV=$(replace_version_separator 2 'r')
+MY_PV=$(delete_version_separator 1 ${MY_PV})
+
+DESCRIPTION="Computing automorphism groups of graphs and digraphs"
+HOMEPAGE="http://pallini.di.uniroma1.it/"
+SRC_URI="http://cs.anu.edu.au/~bdm/${PN}/${PN}${MY_PV}.tar.gz"
+
+LICENSE="nauty"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE=""
+
+S="${WORKDIR}/${PN}${MY_PV}"
+
+src_prepare () {
+	sed \
+		-e "s/^LDFLAGS=.*/LDFLAGS=${LDFLAGS}/" \
+		-e 's:${CC} -o:${CC} ${LDFLAGS} -o:g' \
+		-e 's:${LDFLAGS}$::g' \
+		-i makefile.in || die
+}
+
+src_test () {
+	emake checks
+	./runalltests
+}
+
+src_install () {
+	dobin addedgeg amtog biplabg catg complg copyg countg \
+		deledgeg directg dreadnaut dretog genbg geng genrang \
+		gentourng labelg listg multig newedgeg NRswitchg pickg \
+		planarg shortg showg
+	dodoc README formats.txt nug*.pdf
+}