From d9e9f2245eb28f4793301d5d01560871bb187716 Mon Sep 17 00:00:00 2001
From: Aaron Bauman <bman@gentoo.org>
Date: Thu, 24 Sep 2020 15:02:20 -0400
Subject: sci-chemistry/theseus: drop old EAPI=5

Signed-off-by: Aaron Bauman <bman@gentoo.org>
---
 sci-chemistry/theseus/Manifest             |  2 -
 sci-chemistry/theseus/theseus-2.0.6.ebuild | 64 ---------------------------
 sci-chemistry/theseus/theseus-3.0.0.ebuild | 69 ------------------------------
 3 files changed, 135 deletions(-)
 delete mode 100644 sci-chemistry/theseus/theseus-2.0.6.ebuild
 delete mode 100644 sci-chemistry/theseus/theseus-3.0.0.ebuild

(limited to 'sci-chemistry')

diff --git a/sci-chemistry/theseus/Manifest b/sci-chemistry/theseus/Manifest
index 30c0777c7edc..e89bd4c6849f 100644
--- a/sci-chemistry/theseus/Manifest
+++ b/sci-chemistry/theseus/Manifest
@@ -1,3 +1 @@
-DIST theseus_2.0.6.tar.gz 1257560 BLAKE2B 80115f5ace6fe306b10254f9a7b889e5bc61afbd3cff4941953b9a82750ce1b36ac5724a94fd7e7892622684d7e5bf6ae9ed7c96d76364329d756114efbe1dd0 SHA512 70604c468eb841b92e77a3e91cd57120b96c171512fb1cc31a407b7c4816150dfa31ec123fb9568a842e623f3252c60df0dc53d40fa2a4aece6e3c77039f4696
-DIST theseus_3.0.0.tar.gz 1213574 BLAKE2B 17021c7d36b3ac3d8e7f84bbe2614523d461a3877bca4b20b6891b67de02b0d02376e695f0db813e8f598f7dee32076548444defc30b016588b70be14cf3f308 SHA512 251e6273624126406609691e1205d9693c18dcbc8c81e10c77101ac4a1b6bdffcb56a47fd5fdc7ed6ed4fa107c2ed26b03a1780f951f9cc69a25c0722996e7b2
 DIST theseus_3.3.0.tar.gz 22548124 BLAKE2B 0ad49f768e1584bf40e90ff6fd0d884b6b27ee59ad31ce75050293b817a3747969ab0c4b4ff982aadbdc5301c1c56522540b78aab045e841c099a80dd546c8e9 SHA512 1fba3e8019a40214defdae13d4721d170ee698337d8efd4e872af22f8ab3cb1fdd52fa9f19a858ee51bc98150692af0c6016033feb0d76f29acaf7fffbb430e2
diff --git a/sci-chemistry/theseus/theseus-2.0.6.ebuild b/sci-chemistry/theseus/theseus-2.0.6.ebuild
deleted file mode 100644
index 7c3f3783602c..000000000000
--- a/sci-chemistry/theseus/theseus-2.0.6.ebuild
+++ /dev/null
@@ -1,64 +0,0 @@
-# Copyright 1999-2015 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-inherit multilib toolchain-funcs
-
-DESCRIPTION="Maximum likelihood superpositioning and analysis of macromolecular structures"
-HOMEPAGE="http://www.theseus3d.org/"
-SRC_URI="http://www.theseus3d.org/src/${PN}_${PV}.tar.gz"
-
-SLOT="0"
-LICENSE="GPL-3"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-IUSE="examples"
-
-RDEPEND="
-	sci-libs/gsl
-	|| (
-		sci-biology/muscle
-		sci-biology/probcons
-		sci-biology/mafft
-		sci-biology/t-coffee
-		sci-biology/kalign
-		sci-biology/clustalw:2
-		)"
-DEPEND="${RDEPEND}
-	virtual/pkgconfig"
-
-S="${WORKDIR}"/${PN}_src/
-
-src_prepare() {
-	cat >> make.inc <<- EOF
-	ARCH = $(tc-getAR)
-	ARCHFLAGS = -rvs
-	RANLIB = $(tc-getRANLIB)
-	LOCALLIBDIR = "${EPREFIX}/usr/$(get_libdir)
-	SYSLIBS = $(pkg-config --libs gsl) -lpthread
-	LIBS = -ldistfit -lmsa -ldssplite -ldltmath -lDLTutils -ltheseus
-	LIBDIR = -L./lib
-	INSTALLDIR = "${ED}"/usr/bin
-	OPT =
-	WARN =
-	CFLAGS = ${CFLAGS} \$(WARN)
-	CC = $(tc-getCC)
-	EOF
-
-	sed \
-		-e 's|theseus:|theseus: libs|g' \
-		-e '/-o theseus/s:$(CC):$(CC) ${LDFLAGS}:g' \
-		-i Makefile || die
-
-	sed \
-		-e 's:/usr/bin/sed:sed:g' \
-		-e "s:/usr/local/bin/:/usr/bin/:g" \
-		-e "s:/usr/bin/:${EPREFIX}/usr/bin/:g" \
-		-i theseus_align || die
-}
-
-src_install() {
-	dobin theseus theseus_align
-	dodoc theseus_man.pdf README AUTHORS
-	use examples && insinto /usr/share/${PN} && doins -r examples
-}
diff --git a/sci-chemistry/theseus/theseus-3.0.0.ebuild b/sci-chemistry/theseus/theseus-3.0.0.ebuild
deleted file mode 100644
index 583bdf1e28c5..000000000000
--- a/sci-chemistry/theseus/theseus-3.0.0.ebuild
+++ /dev/null
@@ -1,69 +0,0 @@
-# Copyright 1999-2020 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-inherit multilib toolchain-funcs
-
-DESCRIPTION="Maximum likelihood superpositioning and analysis of macromolecular structures"
-HOMEPAGE="http://www.theseus3d.org/"
-SRC_URI="http://www.theseus3d.org/src/${PN}_${PV}.tar.gz"
-
-SLOT="0"
-LICENSE="GPL-3"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-IUSE="examples"
-
-RDEPEND="
-	sci-libs/gsl
-	|| (
-		sci-biology/muscle
-		sci-biology/probcons
-		sci-biology/mafft
-		sci-biology/t-coffee
-		sci-biology/kalign
-		sci-biology/clustalw:2
-		)"
-DEPEND="${RDEPEND}
-	virtual/pkgconfig"
-
-S="${WORKDIR}"/${PN}_src/
-
-src_prepare() {
-	cat >> make.inc <<- EOF
-	ARCH = $(tc-getAR)
-	ARCHFLAGS = -rvs
-	RANLIB = $(tc-getRANLIB)
-	LOCALLIBDIR = "${EPREFIX}/usr/$(get_libdir)
-	SYSLIBS = $(pkg-config --libs gsl) -lpthread
-	LIBS = -ldistfit -lmsa -ldssplite -ldltmath -lDLTutils -ltheseus
-	LIBDIR = -L./lib
-	INSTALLDIR = "${ED}"/usr/bin
-	OPT =
-	WARN =
-	CFLAGS = ${CFLAGS} -std=c11 \$(WARN)
-	CC = $(tc-getCC)
-	EOF
-
-	sed \
-		-e 's|theseus:|theseus: libs|g' \
-		-e '/-o theseus/s:$(CC):$(CC) ${LDFLAGS}:g' \
-		-i Makefile || die
-
-	sed \
-		-e 's:/usr/bin/sed:sed:g' \
-		-e "s:/usr/local/bin/:/usr/bin/:g" \
-		-e "s:/usr/bin/:${EPREFIX}/usr/bin/:g" \
-		-i theseus_align || die
-}
-
-src_compile() {
-	emake ltheseus
-	default
-}
-
-src_install() {
-	dobin theseus theseus_align
-	dodoc theseus_man.pdf README AUTHORS
-	use examples && insinto /usr/share/${PN} && doins -r examples
-}
-- 
cgit v1.2.3-65-gdbad