From 3dcd860e419d637e622ff61ee6f0acec2916e7d7 Mon Sep 17 00:00:00 2001
From: David Seifert <soap@gentoo.org>
Date: Thu, 16 Nov 2017 14:15:49 +0100
Subject: sci-biology/kallisto: Initial addition

Closes: https://github.com/gentoo/sci/pull/814
Package-Manager: Portage-2.3.14, Repoman-2.3.6
---
 sci-biology/kallisto/Manifest               |  1 +
 sci-biology/kallisto/kallisto-0.43.1.ebuild | 25 +++++++++++++++++++++++++
 sci-biology/kallisto/kallisto-9999.ebuild   | 25 +++++++++++++++++++++++++
 sci-biology/kallisto/metadata.xml           | 19 +++++++++++++++++++
 4 files changed, 70 insertions(+)
 create mode 100644 sci-biology/kallisto/Manifest
 create mode 100644 sci-biology/kallisto/kallisto-0.43.1.ebuild
 create mode 100644 sci-biology/kallisto/kallisto-9999.ebuild
 create mode 100644 sci-biology/kallisto/metadata.xml

(limited to 'sci-biology')

diff --git a/sci-biology/kallisto/Manifest b/sci-biology/kallisto/Manifest
new file mode 100644
index 000000000000..7cb0b2575930
--- /dev/null
+++ b/sci-biology/kallisto/Manifest
@@ -0,0 +1 @@
+DIST kallisto-0.43.1.tar.gz 1067076 SHA256 2164938c2c61c04e338c4c132cf749f56d39e6f0b4c517121bca1fbc218e430e SHA512 c7725a2d649cf96fcd24a20d542b409777cfd9fe97c09f0f459a5ec2981e0a4f5f0ea03d76d3ec3edf0e498c799fc7d074d442d5e35ddb4043d1f7634619dda8 WHIRLPOOL a0f8c2cab5afa3df7cf7f540319d32a99d698ac50e4574c941972fff789e9d8e258124153d16a777180595b201d91e240e5ffd17994cc2571e71f6fcb47fdeee
diff --git a/sci-biology/kallisto/kallisto-0.43.1.ebuild b/sci-biology/kallisto/kallisto-0.43.1.ebuild
new file mode 100644
index 000000000000..0020e891a032
--- /dev/null
+++ b/sci-biology/kallisto/kallisto-0.43.1.ebuild
@@ -0,0 +1,25 @@
+# Copyright 1999-2017 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=6
+
+inherit cmake-utils
+
+DESCRIPTION="Near-optimal RNA-Seq quantification"
+HOMEPAGE="http://pachterlab.github.io/kallisto/"
+
+if [[ ${PV} == *9999 ]]; then
+	inherit git-r3
+	EGIT_REPO_URI="https://github.com/pachterlab/kallisto.git"
+else
+	SRC_URI="https://github.com/pachterlab/${PN}/archive/v${PV}.tar.gz -> ${P}.tar.gz"
+	KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+fi
+
+LICENSE="BSD"
+SLOT="0"
+
+RDEPEND="
+	sci-libs/hdf5:=
+	sys-libs/zlib:="
+DEPEND="${RDEPEND}"
diff --git a/sci-biology/kallisto/kallisto-9999.ebuild b/sci-biology/kallisto/kallisto-9999.ebuild
new file mode 100644
index 000000000000..0020e891a032
--- /dev/null
+++ b/sci-biology/kallisto/kallisto-9999.ebuild
@@ -0,0 +1,25 @@
+# Copyright 1999-2017 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=6
+
+inherit cmake-utils
+
+DESCRIPTION="Near-optimal RNA-Seq quantification"
+HOMEPAGE="http://pachterlab.github.io/kallisto/"
+
+if [[ ${PV} == *9999 ]]; then
+	inherit git-r3
+	EGIT_REPO_URI="https://github.com/pachterlab/kallisto.git"
+else
+	SRC_URI="https://github.com/pachterlab/${PN}/archive/v${PV}.tar.gz -> ${P}.tar.gz"
+	KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+fi
+
+LICENSE="BSD"
+SLOT="0"
+
+RDEPEND="
+	sci-libs/hdf5:=
+	sys-libs/zlib:="
+DEPEND="${RDEPEND}"
diff --git a/sci-biology/kallisto/metadata.xml b/sci-biology/kallisto/metadata.xml
new file mode 100644
index 000000000000..aba0d0ebf330
--- /dev/null
+++ b/sci-biology/kallisto/metadata.xml
@@ -0,0 +1,19 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+	<maintainer type="person">
+		<email>mschu.dev@gmail.com</email>
+		<name>Michael Schubert</name>
+	</maintainer>
+	<maintainer type="project">
+		<email>proxy-maint@gentoo.org</email>
+		<name>Proxy Maintainers</name>
+	</maintainer>
+	<maintainer type="project">
+		<email>sci-biology@gentoo.org</email>
+		<name>Gentoo Biology Project</name>
+	</maintainer>
+	<upstream>
+		<remote-id type="github">pachterlab/kallisto</remote-id>
+	</upstream>
+</pkgmetadata>
-- 
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