diff options
-rw-r--r-- | sci-mathematics/rstudio/Manifest | 1 | ||||
-rw-r--r-- | sci-mathematics/rstudio/files/rstudio-1.3.1056-R-4.0.0.patch | 58 | ||||
-rw-r--r-- | sci-mathematics/rstudio/files/rstudio-1.3.1056-boost-1.74.0.patch | 30 | ||||
-rw-r--r-- | sci-mathematics/rstudio/rstudio-1.3.1056.ebuild | 232 |
4 files changed, 321 insertions, 0 deletions
diff --git a/sci-mathematics/rstudio/Manifest b/sci-mathematics/rstudio/Manifest index 063f62802551..686f27d6dda7 100644 --- a/sci-mathematics/rstudio/Manifest +++ b/sci-mathematics/rstudio/Manifest @@ -1,4 +1,5 @@ DIST core-dictionaries.zip 876339 BLAKE2B f29afcbf5a7f8ec635e5a5b248d978af286d18488f54c9a09a2b95fde19b796e4473e5846402a46dd24b71c6e4167512539aaa32ab6d99713d500a80aaf46796 SHA512 9c5830cc9fed575e223f1c61f02e48c5aea6801bb0cd2586f02437c17fdffdb1d36c396d5a8ecbe02ba01196e73458304345b1f6b92c052bc7a7d05961fac2c9 DIST rstudio-1.2.5033.tar.gz 20456976 BLAKE2B 3cbca6a5180690104dddf1456168bd38708d4152ed9b7a167035dd66e270aeb6405169d34461cbd899738be1872607e3f3b6f81ff0b3c9e6a9ed965a889b1393 SHA512 3569d4fed342275a9905c87e4f97be63b6391d2c37f75397e06201a7c31f80d94799214f51ff8e57d458ef18d5e54afe1ec8a7c56ac05ed8b8225ecca72d1daf DIST rstudio-1.2.5042.tar.gz 20456999 BLAKE2B 3251ab2511daefefa395256fedb273ecc36dbc8118457474e3647f7616baea91301e597896582ad4b191195fc7baf17645c4c25b9a957a0c17a6251151b1dd87 SHA512 e09f2360abecde0c16e240e6838efb270a355bec3d3982ffde2b01b32b21e9281fef465734edbfeb5e05375529cc7f06d5b5d41304f367982f53ae7ad98e20f9 +DIST rstudio-1.3.1056.tar.gz 89584544 BLAKE2B 0e758ad97f9faa2d3932a49dafd92bc21199a5c0a20e2d8480267ebbb7cd11dc38596b4bb697e04add7bfe6b126f7b2ae6675040a0ac8caca5a5cf737f5ad6eb SHA512 8a9077c2ae021e0cf4cca41b374a50534087b35fd2c1e4b18bdd5ba3672e1ab275046e483ec8a3aba729a8e39f961149fb03a053ea005d8a32873b51201baca2 DIST rstudio-1.3.959.tar.gz 89639419 BLAKE2B d45b2c1b0e426ddb5a945e59a8127ddfd47f6230ef0929639c4b525382ae57437a273df6ade85cfbf3a29911cf0158ee2e0808bfa94e783d70d4615f6c228f31 SHA512 e5d8bfe16011790ff4723c731043f44070d8fe48f85c5a9ab8389c9a2b7a1d3813e9362063ec4c6a6ca3b0a0857e2190481cbb74191650a129c0d2e10b342fac diff --git a/sci-mathematics/rstudio/files/rstudio-1.3.1056-R-4.0.0.patch b/sci-mathematics/rstudio/files/rstudio-1.3.1056-R-4.0.0.patch new file mode 100644 index 000000000000..662089e93a01 --- /dev/null +++ b/sci-mathematics/rstudio/files/rstudio-1.3.1056-R-4.0.0.patch @@ -0,0 +1,58 @@ +From 71b1a935762efd24a79de193662450de5a89f67e Mon Sep 17 00:00:00 2001 +From: Jonathan McPherson <jonathan@rstudio.com> +Date: Tue, 14 Jan 2020 12:53:20 -0800 +Subject: [PATCH] use R_NoSave over R_Slave for R 4.0+ + +--- + src/cpp/r/CMakeLists.txt | 12 ++++++++++++ + src/cpp/r/config.h.in | 8 +++++++- + src/cpp/r/session/REmbeddedPosix.cpp | 20 ++++++++++++++------ + 3 files changed, 33 insertions(+), 7 deletions(-) + +diff --git a/src/cpp/r/CMakeLists.txt b/src/cpp/r/CMakeLists.txt +index 6984ae309c..29784b8b67 100644 +--- a/src/cpp/r/CMakeLists.txt ++++ b/src/cpp/r/CMakeLists.txt +@@ -15,6 +15,18 @@ + + project (R) + ++# find the version of R in play ++find_package(LibR REQUIRED) ++execute_process( ++ COMMAND "${LIBR_EXECUTABLE}" "--vanilla" "--slave" "-e" "cat(as.character(getRversion()))" ++ OUTPUT_VARIABLE LIBR_VERSION) ++ ++# parse and save the R version to a variable ++string(REPLACE "." ";" R_VERSION_LIST "${LIBR_VERSION}") ++list(GET R_VERSION_LIST 0 R_VERSION_MAJOR) ++list(GET R_VERSION_LIST 1 R_VERSION_MINOR) ++list(GET R_VERSION_LIST 2 R_VERSION_PATCH) ++ + # include files + file(GLOB_RECURSE R_HEADER_FILES "*.h*") + +diff --git a/src/cpp/r/config.h.in b/src/cpp/r/config.h.in +index 6ba67c8e09..00bc8b6191 100644 +--- a/src/cpp/r/config.h.in ++++ b/src/cpp/r/config.h.in +@@ -1,7 +1,7 @@ + /* + * config.h.in + * +- * Copyright (C) 2009-12 by RStudio, PBC ++ * Copyright (C) 2009-20 by RStudio, Inc. + * + * Unless you have received this program directly from RStudio pursuant + * to the terms of a commercial license agreement with RStudio, then +@@ -16,4 +16,10 @@ + + #cmakedefine PANGO_CAIRO_FOUND + ++// Important: These variables represent the version of R found during ++// compile/link time, NOT the version of R present at runtime. ++#define R_VERSION_MAJOR ${R_VERSION_MAJOR} ++#define R_VERSION_MINOR ${R_VERSION_MINOR} ++#define R_VERSION_PATCH ${R_VERSION_PATCH} ++ + diff --git a/sci-mathematics/rstudio/files/rstudio-1.3.1056-boost-1.74.0.patch b/sci-mathematics/rstudio/files/rstudio-1.3.1056-boost-1.74.0.patch new file mode 100644 index 000000000000..2fde3119e2a4 --- /dev/null +++ b/sci-mathematics/rstudio/files/rstudio-1.3.1056-boost-1.74.0.patch @@ -0,0 +1,30 @@ +--- rstudio-1.3.1056-orig/src/cpp/core/file_lock/FileLock.cpp 2020-07-08 08:25:03.000000000 +1000 ++++ rstudio-1.3.1056/src/cpp/core/file_lock/FileLock.cpp 2020-07-17 18:01:57.016882590 +1000 +@@ -26,6 +26,7 @@ + #include <core/system/Environment.hpp> + + #include <boost/algorithm/string.hpp> ++#include <boost/bind.hpp> + + // borrowed from SessionConstants.hpp + #define kRStudioSessionRoute "RSTUDIO_SESSION_ROUTE" +--- rstudio-1.3.1056-orig/src/cpp/core/HtmlUtils.cpp 2020-07-08 08:25:03.000000000 +1000 ++++ rstudio-1.3.1056/src/cpp/core/HtmlUtils.cpp 2020-07-17 18:01:58.129886387 +1000 +@@ -19,6 +19,7 @@ + + #include <boost/format.hpp> + #include <boost/algorithm/string/predicate.hpp> ++#include <boost/bind.hpp> + + #include <core/Base64.hpp> + #include <core/FileSerializer.hpp> +--- rstudio-1.3.1056-orig/src/cpp/r/session/RStdCallbacks.cpp 2020-07-08 08:25:03.000000000 +1000 ++++ rstudio-1.3.1056/src/cpp/r/session/RStdCallbacks.cpp 2020-07-17 18:32:09.044071640 +1000 +@@ -19,6 +19,7 @@ + + #include <boost/function.hpp> + #include <boost/regex.hpp> ++#include <boost/bind.hpp> + + #include <r/RExec.hpp> + #include <r/ROptions.hpp> diff --git a/sci-mathematics/rstudio/rstudio-1.3.1056.ebuild b/sci-mathematics/rstudio/rstudio-1.3.1056.ebuild new file mode 100644 index 000000000000..49d75885be5f --- /dev/null +++ b/sci-mathematics/rstudio/rstudio-1.3.1056.ebuild @@ -0,0 +1,232 @@ +# Copyright 1999-2020 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=7 + +inherit eutils cmake pam xdg-utils java-pkg-2 java-ant-2 pax-utils prefix qmake-utils vcs-clean + +# TODO +# * use dict from tree, linguas +# * do src_test (use junit from tree?) + +GIN_VER=2.1.2 +# grep 'PANDOC_VERSION=' dependencies/common/install-pandoc +# It should be PANDOC_VER=2.7.3 however >=app-text/pandoc-2.7.3 is not yet in portage +PANDOC_VER=1.19.2.1 +# grep -5 QT_CANDIDATES src/cpp/desktop/CMakeLists.txt +QT_VER=5.12.6 +QT_SLOT=5 + +DESCRIPTION="IDE for the R language" +HOMEPAGE=" + http://www.rstudio.org + https://github.com/rstudio/rstudio/" +SRC_URI=" + https://github.com/rstudio/rstudio/archive/v${PV}.tar.gz -> ${P}.tar.gz + https://s3.amazonaws.com/rstudio-dictionaries/core-dictionaries.zip +" + +LICENSE="AGPL-3" +SLOT="0" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +IUSE="dedicated libressl server" + +RDEPEND=" + >=app-text/pandoc-${PANDOC_VER} + dev-java/aopalliance:1 + dev-java/gin:2.1 + dev-java/javax-inject + =dev-java/validation-api-1.0*:1.0[source] + dev-haskell/pandoc-citeproc + dev-lang/R + dev-libs/boost:= + >=dev-libs/mathjax-2.7.4 + sys-apps/util-linux + sys-devel/clang:* + sys-libs/zlib + >=virtual/jre-1.8:= + x11-libs/pango + !dedicated? ( + >=dev-qt/qtcore-${QT_VER}:${QT_SLOT} + >=dev-qt/qtdeclarative-${QT_VER}:${QT_SLOT} + >=dev-qt/qtdbus-${QT_VER}:${QT_SLOT} + >=dev-qt/qtgui-${QT_VER}:${QT_SLOT} + >=dev-qt/qtnetwork-${QT_VER}:${QT_SLOT} + >=dev-qt/qtopengl-${QT_VER}:${QT_SLOT} + >=dev-qt/qtpositioning-${QT_VER}:${QT_SLOT} + >=dev-qt/qtprintsupport-${QT_VER}:${QT_SLOT} + >=dev-qt/qtsingleapplication-2.6.1_p20150629[X,qt5(+)] + >=dev-qt/qtsensors-${QT_VER}:${QT_SLOT} + >=dev-qt/qtsql-${QT_VER}:${QT_SLOT} + >=dev-qt/qtsvg-${QT_VER}:${QT_SLOT} + >=dev-qt/qtwebchannel-${QT_VER}:${QT_SLOT} + >=dev-qt/qtwebengine-${QT_VER}:${QT_SLOT}[widgets] + >=dev-qt/qtwidgets-${QT_VER}:${QT_SLOT} + >=dev-qt/qtxml-${QT_VER}:${QT_SLOT} + >=dev-qt/qtxmlpatterns-${QT_VER}:${QT_SLOT} + server? ( sys-libs/pam ) + ) + dedicated? ( sys-libs/pam ) + dedicated? ( + sys-libs/pam + acct-user/rstudio-server + acct-group/rstudio-server + ) + server? ( + acct-user/rstudio-server + acct-group/rstudio-server + ) + !libressl? ( dev-libs/openssl:0= ) + libressl? ( dev-libs/libressl:0= )" +DEPEND="${RDEPEND} + app-arch/unzip + dev-java/ant-core + >=virtual/jdk-1.8:= + virtual/pkgconfig" +# test? ( dev-java/junit:4 ) + +PATCHES=( + "${FILESDIR}"/${PN}-1.3.959-prefs.patch + "${FILESDIR}"/${PN}-1.3.959-paths.patch + "${FILESDIR}"/${PN}-1.3.959-pandoc-mathjax.patch + "${FILESDIR}"/${PN}-1.2.1335-linker_flags.patch + "${FILESDIR}"/${PN}-1.3.959-qtsingleapplication.patch + "${FILESDIR}"/${PN}-1.0.44-systemd.patch + "${FILESDIR}"/${PN}-1.3.959-core.patch + "${FILESDIR}"/${PN}-1.2.5042-boost-1.73.0.patch + "${FILESDIR}"/${PN}-1.3.1056-R-4.0.0.patch + "${FILESDIR}"/${PN}-1.3.1056-boost-1.74.0.patch +) + +src_unpack() { + unpack ${P}.tar.gz + cd "${S}" || die + mkdir -p dependencies/common/dictionaries + unzip -qd dependencies/common/dictionaries \ + "${DISTDIR}"/core-dictionaries.zip || die +} + +src_prepare() { + cmake_src_prepare + java-pkg-2_src_prepare + egit_clean + + # Enable CMake to install our .service file for systemd usage + mkdir -vp "${S}/src/cpp/server/lib/systemd/system" || die + cp -v "${FILESDIR}/rstudio-server.service.in" "${S}/src/cpp/server/lib/systemd/system/" || die + + # Adding -DDISTRO_SHARE=... to append-flags breaks cmake so using + # this sed hack for now. ~RMH + sed -i \ + -e "s|DISTRO_SHARE|\"share/${PN}\"|g" \ + src/cpp/server/ServerOptions.cpp \ + src/cpp/session/SessionOptions.cpp || die + + # use mathjax from system + ln -sf "${EPREFIX}"/usr/share/mathjax dependencies/common/mathjax-26 || die + + # make sure icons and mime stuff are with prefix + sed -i \ + -e "s:/usr:${EPREFIX}/usr:g" \ + CMakeGlobals.txt src/cpp/desktop/CMakeLists.txt || die + + # install themes in /etc/rstudio/extra/sthemes instead of /usr/extra/themes + sed -i \ + -e "s@\(DESTINATION \"\)\(extras/themes\"\)@\1${EROOT}/etc/rstudio/\2@" \ + src/cpp/server/CMakeLists.txt || die + + # On Gentoo the rstudio-server configuration file is /etc/conf.d/rstudio-server.conf + sed -e "s@/etc/rstudio/rserver.conf@${EROOT}/etc/conf.d/rstudio-server.conf@" \ + -i src/cpp/server/ServerOptions.cpp \ + || die + + # Set the rsession.conf file location for Gentoo prefix + sed -e "s@/etc/rstudio/rsession.conf@${EROOT}/etc/rstudio/rsession.conf@" \ + -i src/cpp/session/SessionOptions.cpp \ + || die + + # dev-qt/qtsingleapplication-2.6.1_p20150629 does not provide a cmake module. + # It provides a library that has its version number appended to the end, + # which is difficult to handle in cmake, as find_library does not support + # searching for wildcard library names. So I find the library name from the + # qmake spec, and then sed this into the patched src/cpp/desktop/CMakeLists.txt. + rm -rf "${S}"/src/cpp/desktop/3rdparty || die + local s=$(grep '\-lQt$${QT_MAJOR_VERSION}Solutions_SingleApplication' \ + $(qt5_get_mkspecsdir)/features/qtsingleapplication.prf \ + | sed -e 's@\$\${QT_MAJOR_VERSION}@5@' \ + -e 's@LIBS \*= -l@@') + sed -e "s@Qt5Solutions_SingleApplication-2.6@${s}@g" \ + -i "${S}"/src/cpp/desktop/CMakeLists.txt \ + || die + + # The git commit for tag: git rev-list -n 1 v${PV} + sed -e 's@git ARGS rev-parse HEAD@echo ARGS 5a4dee980c998d9a270a83b582b367126f3914cf@'\ + -i "${S}"/CMakeLists.txt \ + "${S}"/CMakeGlobals.txt \ + || die + + eprefixify src/gwt/build.xml +} + +src_configure() { + export RSTUDIO_VERSION_MAJOR=$(ver_cut 1) + export RSTUDIO_VERSION_MINOR=$(ver_cut 2) + export RSTUDIO_VERSION_PATCH=$(ver_cut 3) + + local mycmakeargs=( + -DDISTRO_SHARE=share/${PN} + -DRSTUDIO_TARGET=$(usex dedicated "Server" "$(usex server "Development" "Desktop")") + -DRSTUDIO_VERIFY_R_VERSION=FALSE + -DRSTUDIO_USE_SYSTEM_BOOST=TRUE + ) + + if use !dedicated; then + mycmakeargs+=( + -DRSTUDIO_INSTALL_FREEDESKTOP="$(usex !dedicated "ON" "OFF")" + -DQT_QMAKE_EXECUTABLE=$(qt5_get_bindir)/qmake + ) + fi + cmake_src_configure +} + +src_compile() { + local JAVA_ANT_REWRITE_CLASSPATH="yes" + local EANT_BUILD_XML="src/gwt/build.xml" + local EANT_BUILD_TARGET="clean" + java-pkg-2_src_compile + + # Avoid the rest of the oracle-jdk-bin-1.8.0.60 sandbox violations F: mkdir S: deny + # P: /root/.oracle_jre_usage. + export ANT_OPTS="-Duser.home=${T}" + cmake_src_compile +} + +src_install() { + export ANT_OPTS="-Duser.home=${T}" + cmake_src_install + use dedicated || pax-mark m "${ED}/usr/bin/rstudio" + doconfd "${FILESDIR}"/rstudio-server.conf + insinto /etc/rstudio + doins "${FILESDIR}"/rsession.conf + dosym ../conf.d/rstudio-server.conf /etc/rstudio/rserver.conf + if use dedicated || use server; then + dopamd src/cpp/server/extras/pam/rstudio + newinitd "${FILESDIR}"/rstudio-server.initd rstudio-server + fi +} + +pkg_preinst() { + java-pkg-2_pkg_preinst +} + +pkg_postinst() { + use dedicated || { xdg_desktop_database_update + xdg_mimeinfo_database_update + xdg_icon_cache_update ;} +} + +pkg_postrm() { + use dedicated || { xdg_desktop_database_update + xdg_mimeinfo_database_update + xdg_icon_cache_update ;} +} |