From ce12d41df7b9ff0999b2998d407edb57abe7b9ea Mon Sep 17 00:00:00 2001
From: Michael Schubert <mschu.dev@gmail.com>
Date: Mon, 11 Nov 2024 13:59:05 +0000
Subject: sci-biology/bx-python: version bump 0.13.0

Signed-off-by: Michael Schubert <mschu.dev@gmail.com>
Closes: https://github.com/gentoo/sci/pull/1297
Signed-off-by: Nowa Ammerlaan <nowa@gentoo.org>
---
 sci-biology/bx-python/Manifest                |  2 +-
 sci-biology/bx-python/bx-python-0.12.0.ebuild | 41 ---------------------------
 sci-biology/bx-python/bx-python-0.13.0.ebuild | 37 ++++++++++++++++++++++++
 3 files changed, 38 insertions(+), 42 deletions(-)
 delete mode 100644 sci-biology/bx-python/bx-python-0.12.0.ebuild
 create mode 100644 sci-biology/bx-python/bx-python-0.13.0.ebuild

diff --git a/sci-biology/bx-python/Manifest b/sci-biology/bx-python/Manifest
index 69572ef1e..73b861a86 100644
--- a/sci-biology/bx-python/Manifest
+++ b/sci-biology/bx-python/Manifest
@@ -1 +1 @@
-DIST bx-python-0.12.0.gh.tar.gz 1660806 BLAKE2B 0eddb9b9a93520319d275001067a3518015483605cf4d096729ec92e14c0eb35f2ceb34db964216dd3c6687351a7415c46061960b1f66a7564c90efeba3a587b SHA512 821b33841dd2935485669f6c112277d404475b1cd778deb3eaa1194f3b21594335a219d9345e279e7afc3adb1e347e71e60f0029712fc58e95d1e70f9e8fbb55
+DIST bx-python-0.13.0.gh.tar.gz 1611987 BLAKE2B 138c081c60249e492cbb1474f88a92faadc76c5340555599d93a97a7d8b8e5130e71724f18174262dff3f286678f3d5cac03362aadadf81ecd90a0b6f621927c SHA512 345faf1f42b24ae97216bb9d231e7f97093cd607d51fe51129335e2c077e47dc30a3657b27733674caace5f32eebab8ef64a3f912c585fabf07333722d24317c
diff --git a/sci-biology/bx-python/bx-python-0.12.0.ebuild b/sci-biology/bx-python/bx-python-0.12.0.ebuild
deleted file mode 100644
index 1a00b0395..000000000
--- a/sci-biology/bx-python/bx-python-0.12.0.ebuild
+++ /dev/null
@@ -1,41 +0,0 @@
-# Copyright 1999-2024 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-
-DISTUTILS_USE_PEP517=setuptools
-DISTUTILS_EXT=1
-PYTHON_COMPAT=( python3_{10..12} )
-
-inherit distutils-r1
-
-DESCRIPTION="Library for rapid implementation of genome scale analyses"
-HOMEPAGE="https://github.com/bxlab/bx-python"
-SRC_URI="https://github.com/bxlab/bx-python/archive/v${PV}.tar.gz -> ${P}.gh.tar.gz"
-
-LICENSE="MIT"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-
-RDEPEND="dev-python/numpy[${PYTHON_USEDEP}]"
-DEPEND="dev-python/cython[${PYTHON_USEDEP}]"
-
-# doctests have external deps
-PATCHES=(
-	"${FILESDIR}/no-doctest.patch"
-)
-
-distutils_enable_tests pytest
-
-# https://github.com/bxlab/bx-python/issues/101
-EPYTEST_DESELECT=(
-	lib.linux-x86_64-cpython-312/bx/binned_array_tests.py::test_file_lzo
-	lib.linux-x86_64-cpython-312/bx/binned_array_tests.py::test_binned_array_writer
-)
-
-python_test() {
-	cd "${BUILD_DIR}/build" || die
-	ln -s "${S}/pytest.ini" . || die
-	ln -s "${S}/test_data" . || die
-	epytest
-}
diff --git a/sci-biology/bx-python/bx-python-0.13.0.ebuild b/sci-biology/bx-python/bx-python-0.13.0.ebuild
new file mode 100644
index 000000000..0062da958
--- /dev/null
+++ b/sci-biology/bx-python/bx-python-0.13.0.ebuild
@@ -0,0 +1,37 @@
+# Copyright 1999-2024 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+DISTUTILS_USE_PEP517=setuptools
+DISTUTILS_EXT=1
+PYTHON_COMPAT=( python3_{10..12} )
+
+inherit distutils-r1
+
+DESCRIPTION="Library for rapid implementation of genome scale analyses"
+HOMEPAGE="https://github.com/bxlab/bx-python"
+SRC_URI="https://github.com/bxlab/bx-python/archive/v${PV}.tar.gz -> ${P}.gh.tar.gz"
+
+LICENSE="MIT"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+
+BDEPEND="test? ( dev-python/python-lzo[${PYTHON_USEDEP}] )"
+RDEPEND="dev-python/numpy[${PYTHON_USEDEP}]"
+DEPEND="dev-python/cython[${PYTHON_USEDEP}]"
+
+# doctests have external deps
+PATCHES=(
+	"${FILESDIR}/no-doctest.patch"
+)
+
+distutils_enable_tests pytest
+
+# https://github.com/bxlab/bx-python/issues/101
+python_test() {
+	cd "${BUILD_DIR}/build" || die
+	ln -s "${S}/pytest.ini" . || die
+	ln -s "${S}/test_data" . || die
+	epytest
+}
-- 
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