diff options
| -rw-r--r-- | sci-biology/phyml/ChangeLog | 9 | ||||
| -rw-r--r-- | sci-biology/phyml/Manifest | 16 | ||||
| -rw-r--r-- | sci-biology/phyml/files/digest-phyml-2.4.5 | 3 | ||||
| -rw-r--r-- | sci-biology/phyml/metadata.xml | 15 | ||||
| -rw-r--r-- | sci-biology/phyml/phyml-2.4.5.ebuild | 31 |
5 files changed, 74 insertions, 0 deletions
diff --git a/sci-biology/phyml/ChangeLog b/sci-biology/phyml/ChangeLog new file mode 100644 index 000000000000..6f83916d7bc2 --- /dev/null +++ b/sci-biology/phyml/ChangeLog @@ -0,0 +1,9 @@ +# ChangeLog for sci-biology/phyml +# Copyright 1999-2006 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/phyml/ChangeLog,v 1.1 2006/08/18 19:27:04 gongloo Exp $ + +*phyml-2.4.5 (18 Aug 2006) + + 18 Aug 2006; <gongloo@gentoo.org> +metadata.xml, +phyml-2.4.5.ebuild: + Initial commit. + diff --git a/sci-biology/phyml/Manifest b/sci-biology/phyml/Manifest new file mode 100644 index 000000000000..45461c4003d5 --- /dev/null +++ b/sci-biology/phyml/Manifest @@ -0,0 +1,16 @@ +DIST phyml_v2.4.5.tar.gz 92143 RMD160 4883cefd023a59ec6a8e6a780774b1800b37d714 SHA1 d76920654ca50c97fa7db77125ccce29f572d238 SHA256 e8a1d3980137f8e528d0e59472aff37dbac615860a7d3ee4cdb64f30dfea296e +EBUILD phyml-2.4.5.ebuild 613 RMD160 10b932fb3ca8838d2c4db31b0e7369030ce1256c SHA1 cd5240dc7273d3f00d3a0e28064fdf580c7d039a SHA256 ddb092a97808cae0e39ee64e0c7737923570b3fc9c1dcbcd124cd8c3b1e02979 +MD5 01e0a9a53f63399a9ca8ba07612ad0aa phyml-2.4.5.ebuild 613 +RMD160 10b932fb3ca8838d2c4db31b0e7369030ce1256c phyml-2.4.5.ebuild 613 +SHA256 ddb092a97808cae0e39ee64e0c7737923570b3fc9c1dcbcd124cd8c3b1e02979 phyml-2.4.5.ebuild 613 +MISC ChangeLog 237 RMD160 6ca027c257b49d07a4fea6e3fe97f58fbc5ac252 SHA1 e1d593a67f1c6d5f594506ca9e30205b8c04626e SHA256 a22fe01469587669a7b238aa16cd93dd6882ed05ff8f1280b592807c3cde3447 +MD5 821a00ee90f001354d8aafcdf5d10260 ChangeLog 237 +RMD160 6ca027c257b49d07a4fea6e3fe97f58fbc5ac252 ChangeLog 237 +SHA256 a22fe01469587669a7b238aa16cd93dd6882ed05ff8f1280b592807c3cde3447 ChangeLog 237 +MISC metadata.xml 564 RMD160 dc4cbace6d7f96e731e560aa5314c2de6a9ea4aa SHA1 2aaab7f56a7504822506f038d02dd4c66280e4b4 SHA256 cc398ec9629e0921a5a6cc6a48fb8335b65d50ae688084695be0e7a69b24f3bd +MD5 41be34e91fd4f20dde9cb012b5599f89 metadata.xml 564 +RMD160 dc4cbace6d7f96e731e560aa5314c2de6a9ea4aa metadata.xml 564 +SHA256 cc398ec9629e0921a5a6cc6a48fb8335b65d50ae688084695be0e7a69b24f3bd metadata.xml 564 +MD5 f859d84d728057f03bda2f75a758456e files/digest-phyml-2.4.5 235 +RMD160 55cb97b716dd7ddd79e14a4b23f865bfdf1ceb29 files/digest-phyml-2.4.5 235 +SHA256 e02e2f7050b7712bd606568cd5fb87c20109e4a44e509708464ecdbd38edb89d files/digest-phyml-2.4.5 235 diff --git a/sci-biology/phyml/files/digest-phyml-2.4.5 b/sci-biology/phyml/files/digest-phyml-2.4.5 new file mode 100644 index 000000000000..8dc8a884bdf1 --- /dev/null +++ b/sci-biology/phyml/files/digest-phyml-2.4.5 @@ -0,0 +1,3 @@ +MD5 0958e17f973feffb8df2f6616672a075 phyml_v2.4.5.tar.gz 92143 +RMD160 4883cefd023a59ec6a8e6a780774b1800b37d714 phyml_v2.4.5.tar.gz 92143 +SHA256 e8a1d3980137f8e528d0e59472aff37dbac615860a7d3ee4cdb64f30dfea296e phyml_v2.4.5.tar.gz 92143 diff --git a/sci-biology/phyml/metadata.xml b/sci-biology/phyml/metadata.xml new file mode 100644 index 000000000000..67bf9cb6373d --- /dev/null +++ b/sci-biology/phyml/metadata.xml @@ -0,0 +1,15 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <herd>sci-biology</herd> + <maintainer> + <email>gongloo@gentoo.org</email> + <name>Hasan Khalil</name> + </maintainer> + <longdescription lang="en"> + Phyml is a simple, fast, and accurate algorithm to estimate large + phylogenies by maximum likelihood. Given input sequence files, it + estimates phylogenies using maximum likelihood, and is capable of + processing large amounts of phylogenetic data. + </longdescription> +</pkgmetadata> diff --git a/sci-biology/phyml/phyml-2.4.5.ebuild b/sci-biology/phyml/phyml-2.4.5.ebuild new file mode 100644 index 000000000000..0d67726acd6b --- /dev/null +++ b/sci-biology/phyml/phyml-2.4.5.ebuild @@ -0,0 +1,31 @@ +# Copyright 1999-2006 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/phyml/phyml-2.4.5.ebuild,v 1.1 2006/08/18 19:27:04 gongloo Exp $ + +DESCRIPTION="A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood." +HOMEPAGE="http://atgc.lirmm.fr/phyml/" +SRC_URI="http://www.lirmm.fr/~guindon/${PN}_v${PV}.tar.gz" + +LICENSE="GPL-2" +SLOT="0" +KEYWORDS="~amd64 ~x86" +IUSE="" + +DEPEND="" +RDEPEND="" + +S=${WORKDIR}/${PN}_v${PV} + +src_unpack() { + unpack ${A} + cd ${S} + sed -i -e 's/^hello !!!//' -e 's/^CFLAGS =/#CFLAGS =/' -e 's/^CC =/#CC =/' Makefile +} + +src_compile() { + make +} + +src_install() { + dobin phyml +} |