sci-libs/scipy: Drop vulnerable versions, #488048

(Portage version: 2.2.7/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)

3 files changed, 5 insertions, 275 deletions

diff --git a/sci-libs/scipy/ChangeLog b/sci-libs/scipy/ChangeLog
index ec76cdf3124b..ef0aded56697 100644
--- a/sci-libs/scipy/ChangeLog
+++ b/sci-libs/scipy/ChangeLog
@@ -1,6 +1,10 @@
 # ChangeLog for sci-libs/scipy
 # Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-libs/scipy/ChangeLog,v 1.103 2013/11/02 09:58:28 ago Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-libs/scipy/ChangeLog,v 1.104 2013/11/02 11:26:20 jlec Exp $
+
+  02 Nov 2013; Justin Lecher <jlec@gentoo.org> -scipy-0.9.0-r1.ebuild,
+  -scipy-0.12.0.ebuild:
+  Drop vulnerable versions, #488048
 
   02 Nov 2013; Agostino Sarubbo <ago@gentoo.org> scipy-0.12.1.ebuild:
   Stable for x86, wrt bug #488048
diff --git a/sci-libs/scipy/scipy-0.12.0.ebuild b/sci-libs/scipy/scipy-0.12.0.ebuild
deleted file mode 100644
index b3b8868fefcf..000000000000
--- a/sci-libs/scipy/scipy-0.12.0.ebuild
+++ /dev/null
@@ -1,135 +0,0 @@
-# Copyright 1999-2013 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-libs/scipy/scipy-0.12.0.ebuild,v 1.6 2013/09/10 02:43:58 patrick Exp $
-
-EAPI=5
-
-PYTHON_COMPAT=( python{2_6,2_7,3_2,3_3} )
-
-inherit eutils fortran-2 distutils-r1 flag-o-matic multilib toolchain-funcs
-
-DESCRIPTION="Scientific algorithms library for Python"
-HOMEPAGE="http://www.scipy.org/"
-SRC_URI="mirror://sourceforge/${PN}/${P}.tar.gz
-	doc? (
-		http://docs.scipy.org/doc/${PN}/${PN}-html.zip -> ${P}-html.zip
-		http://docs.scipy.org/doc/${PN}/${PN}-ref.pdf -> ${P}-ref.pdf
-	)"
-
-LICENSE="BSD LGPL-2"
-SLOT="0"
-IUSE="doc sparse test"
-KEYWORDS="~amd64 ~ppc ~ppc64 ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~x86-macos"
-
-CDEPEND="
-	dev-python/numpy[lapack,${PYTHON_USEDEP}]
-	sci-libs/arpack
-	virtual/cblas
-	virtual/lapack
-	sparse? ( sci-libs/umfpack )"
-DEPEND="${CDEPEND}
-	dev-lang/swig
-	dev-python/cython[${PYTHON_USEDEP}]
-	virtual/pkgconfig
-	doc? ( app-arch/unzip )
-	test? ( dev-python/nose[${PYTHON_USEDEP}] )"
-
-RDEPEND="${CDEPEND}
-	virtual/python-imaging[${PYTHON_USEDEP}]"
-
-DOCS=( HACKING.rst.txt README.txt THANKS.txt LATEST.txt TOCHANGE.txt )
-
-DISTUTILS_IN_SOURCE_BUILD=1
-
-src_unpack() {
-	unpack ${P}.tar.gz
-	if use doc; then
-		unzip -qo "${DISTDIR}"/${P}-html.zip -d html || die
-	fi
-}
-
-pc_incdir() {
-	$(tc-getPKG_CONFIG) --cflags-only-I $@ | \
-		sed -e 's/^-I//' -e 's/[ ]*-I/:/g' -e 's/[ ]*$//'
-}
-
-pc_libdir() {
-	$(tc-getPKG_CONFIG) --libs-only-L $@ | \
-		sed -e 's/^-L//' -e 's/[ ]*-L/:/g' -e 's/[ ]*$//'
-}
-
-pc_libs() {
-	$(tc-getPKG_CONFIG) --libs-only-l $@ | \
-		sed -e 's/[ ]-l*\(pthread\|m\)[ ]*//g' \
-		-e 's/^-l//' -e 's/[ ]*-l/,/g' -e 's/[ ]*$//'
-}
-
-python_prepare_all() {
-	# scipy automatically detects libraries by default
-	export {FFTW,FFTW3,UMFPACK}=None
-	use sparse && unset UMFPACK
-	# the missing symbols are in -lpythonX.Y, but since the version can
-	# differ, we just introduce the same scaryness as on Linux/ELF
-	[[ ${CHOST} == *-darwin* ]] \
-		&& append-ldflags -bundle "-undefined dynamic_lookup" \
-		|| append-ldflags -shared
-	[[ -z ${FC}  ]] && export FC="$(tc-getFC)"
-	# hack to force F77 to be FC until bug #278772 is fixed
-	[[ -z ${F77} ]] && export F77="$(tc-getFC)"
-	export F90="${FC}"
-	export SCIPY_FCONFIG="config_fc --noopt --noarch"
-	append-fflags -fPIC
-
-	local libdir="${EPREFIX}"/usr/$(get_libdir)
-	cat >> site.cfg <<-EOF
-		[blas]
-		include_dirs = $(pc_incdir cblas)
-		library_dirs = $(pc_libdir cblas blas):${libdir}
-		blas_libs = $(pc_libs cblas blas)
-		[lapack]
-		library_dirs = $(pc_libdir lapack):${libdir}
-		lapack_libs = $(pc_libs lapack)
-	EOF
-
-	local PATCHES=(
-		"${FILESDIR}"/${P}-gerqf.patch
-		"${FILESDIR}"/${P}-blitz.patch
-		"${FILESDIR}"/${P}-restore-sys-argv.patch
-		"${FILESDIR}"/${P}-cephes-missing-include.patch
-	)
-	distutils-r1_python_prepare_all
-}
-
-python_compile() {
-	distutils-r1_python_compile ${SCIPY_FCONFIG}
-}
-
-python_test() {
-	distutils_install_for_testing ${SCIPY_FCONFIG}
-	cd "${TEST_DIR}" || die "no ${TEST_DIR} available"
-	# nasty hack to remove weave tests because it is not python3 compat
-	[[ ${TEST_DIR} =~ python3 ]] && rm -r "${TEST_DIR}"/lib/scipy/weave
-#r = scipy.test('full', verbose=10)
-	"${EPYTHON}" -c "
-import scipy, sys
-r = scipy.test('fast',verbose=2)
-sys.exit(0 if r.wasSuccessful() else 1)" || die "Tests fail with ${EPYTHON}"
-}
-
-python_install_all() {
-	if use doc; then
-		dohtml -r "${WORKDIR}"/html/.
-		dodoc "${DISTDIR}"/${P}*pdf
-	fi
-	distutils-r1_python_install_all
-}
-
-python_install() {
-	distutils-r1_python_install ${SCIPY_FCONFIG}
-}
-
-pkg_postinst() {
-	elog "You might want to set the variable SCIPY_PIL_IMAGE_VIEWER"
-	elog "to your prefered image viewer. Example:"
-	elog "\t echo \"export SCIPY_PIL_IMAGE_VIEWER=display\" >> ~/.bashrc"
-}
diff --git a/sci-libs/scipy/scipy-0.9.0-r1.ebuild b/sci-libs/scipy/scipy-0.9.0-r1.ebuild
deleted file mode 100644
index 2e560519bd98..000000000000
--- a/sci-libs/scipy/scipy-0.9.0-r1.ebuild
+++ /dev/null
@@ -1,139 +0,0 @@
-# Copyright 1999-2013 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-libs/scipy/scipy-0.9.0-r1.ebuild,v 1.14 2013/06/17 23:29:09 bicatali Exp $
-
-EAPI="3"
-
-PYTHON_DEPEND="*::3.2"
-SUPPORT_PYTHON_ABIS="1"
-RESTRICT_PYTHON_ABIS="3.3 *-jython"
-
-inherit eutils fortran-2 distutils flag-o-matic toolchain-funcs versionator
-
-SP="${PN}-$(get_version_component_range 1-2)"
-
-DESCRIPTION="Scientific algorithms library for Python"
-HOMEPAGE="http://www.scipy.org/ http://pypi.python.org/pypi/scipy"
-SRC_URI="mirror://sourceforge/${PN}/${P}.tar.gz
-	doc? (
-		http://docs.scipy.org/doc/${P}/${PN}-html.zip -> ${SP}-html.zip
-		http://docs.scipy.org/doc/${P}/${PN}-ref.pdf -> ${SP}-ref.pdf
-	)"
-
-LICENSE="BSD"
-SLOT="0"
-IUSE="doc sparse"
-KEYWORDS="amd64 ~ppc ~ppc64 x86 ~amd64-linux ~x86-linux ~ppc-macos ~x86-macos"
-
-CDEPEND="
-	>=dev-python/numpy-1.5[lapack]
-	>=media-libs/qhull-2012.1-r1
-	sci-libs/arpack
-	sci-libs/superlu
-	virtual/cblas
-	virtual/lapack
-	sparse? ( sci-libs/umfpack )"
-DEPEND="${CDEPEND}
-	virtual/pkgconfig
-	doc? ( app-arch/unzip )
-	sparse? ( dev-lang/swig )"
-RDEPEND="${CDEPEND}
-	dev-python/imaging"
-
-# buggy test suite - still true for 0.9.0
-#RESTRICT="test"
-
-DOCS="THANKS.txt LATEST.txt TOCHANGE.txt"
-
-pkg_setup() {
-	fortran-2_pkg_setup
-	# scipy automatically detects libraries by default
-	export {FFTW,FFTW3,UMFPACK}=None
-	use sparse && unset UMFPACK
-	# the missing symbols are in -lpythonX.Y, but since the version can
-	# differ, we just introduce the same scaryness as on Linux/ELF
-	[[ ${CHOST} == *-darwin* ]] \
-		&& append-ldflags -bundle "-undefined dynamic_lookup" \
-		|| append-ldflags -shared
-	[[ -z ${FC}  ]] && export FC="$(tc-getFC)"
-	# hack to force F77 to be FC until bug #278772 is fixed
-	[[ -z ${F77} ]] && export F77="$(tc-getFC)"
-	export F90="${FC}"
-	export SCIPY_FCONFIG="config_fc --noopt --noarch"
-	append-fflags -fPIC
-}
-
-src_unpack() {
-	unpack ${P}.tar.gz
-	if use doc; then
-		unzip -qo "${DISTDIR}"/${SP}-html.zip -d html || die
-	fi
-}
-
-src_prepare() {
-	epatch \
-		"${FILESDIR}"/${P}-superlu.patch \
-		"${FILESDIR}"/${P}-qhull.patch
-	rm -rf ./scipy/sparse/linalg/dsolve/SuperLU ./scipy/spatial/qhull
-	local libdir="${EPREFIX}"/usr/$(get_libdir)
-	cat > site.cfg <<-EOF
-		[atlas]
-		include_dirs = $($(tc-getPKG_CONFIG) --cflags-only-I \
-			cblas | sed -e 's/^-I//' -e 's/ -I/:/g')
-		library_dirs = $($(tc-getPKG_CONFIG) --libs-only-L \
-			cblas blas lapack| sed -e \
-			's/^-L//' -e 's/ -L/:/g' -e 's/ //g'):${libdir}
-		atlas_libs = $($(tc-getPKG_CONFIG) --libs-only-l \
-			cblas blas | sed -e 's/^-l//' -e 's/ -l/, /g' -e 's/,.pthread//g')
-		lapack_libs = $($(tc-getPKG_CONFIG) --libs-only-l \
-			lapack | sed -e 's/^-l//' -e 's/ -l/, /g' -e 's/,.pthread//g')
-		[blas_opt]
-		include_dirs = $($(tc-getPKG_CONFIG) --cflags-only-I \
-			cblas | sed -e 's/^-I//' -e 's/ -I/:/g')
-		library_dirs = $($(tc-getPKG_CONFIG) --libs-only-L \
-			cblas blas | sed -e 's/^-L//' -e 's/ -L/:/g' \
-			-e 's/ //g'):${libdir}
-		libraries = $($(tc-getPKG_CONFIG) --libs-only-l \
-			cblas blas | sed -e 's/^-l//' -e 's/ -l/, /g' -e 's/,.pthread//g')
-		[lapack_opt]
-		library_dirs = $($(tc-getPKG_CONFIG) --libs-only-L \
-			lapack | sed -e 's/^-L//' -e 's/ -L/:/g' \
-			-e 's/ //g'):${libdir}
-		libraries = $($(tc-getPKG_CONFIG) --libs-only-l \
-			lapack | sed -e 's/^-l//' -e 's/ -l/, /g' -e 's/,.pthread//g')
-	EOF
-}
-
-src_compile() {
-	distutils_src_compile ${SCIPY_FCONFIG}
-}
-
-src_test() {
-	testing() {
-		"$(PYTHON)" setup.py build -b "build-${PYTHON_ABI}" install \
-			--home="${S}/test-${PYTHON_ABI}" --no-compile ${SCIPY_FCONFIG} || die "install test failed"
-		pushd "${S}/test-${PYTHON_ABI}/"lib*/python > /dev/null
-		PYTHONPATH=. "$(PYTHON)" -c "import scipy; scipy.test('full')" 2>&1 | tee test.log
-		grep -q ^ERROR test.log && die "test failed"
-		popd > /dev/null
-		rm -fr test-${PYTHON_ABI}
-	}
-	python_execute_function testing
-}
-
-src_install() {
-	distutils_src_install ${SCIPY_FCONFIG}
-	if use doc; then
-		insinto /usr/share/doc/${PF}
-		doins -r "${WORKDIR}"/html || die
-		doins  "${DISTDIR}"/${SP}*pdf || die
-	fi
-}
-
-pkg_postinst() {
-	distutils_pkg_postinst
-
-	elog "You might want to set the variable SCIPY_PIL_IMAGE_VIEWER"
-	elog "to your prefered image viewer if you don't like the default one. Ex:"
-	elog "\t echo \"export SCIPY_PIL_IMAGE_VIEWER=display\" >> ~/.bashrc"
-}