Moved patch to mirror

(Portage version: 2.2_rc16/cvs/Linux 2.6.25-gentoo-r7 x86_64)

4 files changed, 12 insertions, 571 deletions

diff --git a/sci-libs/lapack-atlas/files/lapack-reference-3.1.1-autotools.patch b/sci-libs/lapack-atlas/files/lapack-reference-3.1.1-autotools.patch
deleted file mode 100644
index e71b5eb6318b..000000000000
--- a/sci-libs/lapack-atlas/files/lapack-reference-3.1.1-autotools.patch
+++ /dev/null
@@ -1,562 +0,0 @@
---- configure.ac 	1970-01-01 01:00:00.000000000 +0100
-+++ configure.ac	2007-11-09 18:12:33.000000000 +0000
-@@ -0,0 +1,21 @@
-+AC_PREREQ(2.59)
-+AC_INIT(lapack, 3.1.1, lapack@cs.utk.edu)
-+AM_INIT_AUTOMAKE([foreign])
-+
-+dnl AC_LANG(Fortran 77)
-+AC_PROG_F77
-+AC_PROG_LIBTOOL
-+
-+sinclude(acx_blas.m4)
-+ACX_BLAS
-+if test x"$BLAS_LIBS" = x; then
-+   AC_MSG_ERROR([Cannot find blas libraries])
-+fi
-+
-+AC_ARG_VAR(NOOPT_FFLAGS, Fortran 77 compiler flags to use for unoptimized files)
-+
-+AC_CONFIG_FILES([Makefile
-+                 SRC/Makefile
-+                 INSTALL/Makefile
-+  		 lapack.pc])
-+AC_OUTPUT
---- Makefile.am 	1970-01-01 01:00:00.000000000 +0100
-+++ Makefile.am	2007-11-09 17:46:18.000000000 +0000
-@@ -0,0 +1,6 @@
-+SUBDIRS = INSTALL SRC
-+
-+pkgconfigdir = $(libdir)
-+pkgconfig_DATA = lapack.pc
-+
-+EXTRA_DIST = README lapack.pc
---- acx_blas.m4 	1970-01-01 01:00:00.000000000 +0100
-+++ acx_blas.m4	2007-08-04 22:50:48.000000000 +0100
-@@ -0,0 +1,191 @@
-+##### http://autoconf-archive.cryp.to/acx_blas.html
-+#
-+# SYNOPSIS
-+#
-+#   ACX_BLAS([ACTION-IF-FOUND[, ACTION-IF-NOT-FOUND]])
-+#
-+# DESCRIPTION
-+#
-+#   This macro looks for a library that implements the BLAS
-+#   linear-algebra interface (see http://www.netlib.org/blas/). On
-+#   success, it sets the BLAS_LIBS output variable to hold the
-+#   requisite library linkages.
-+#
-+#   To link with BLAS, you should link with:
-+#
-+#   	$BLAS_LIBS $LIBS $FLIBS
-+#
-+#   in that order. FLIBS is the output variable of the
-+#   AC_F77_LIBRARY_LDFLAGS macro (called if necessary by ACX_BLAS), and
-+#   is sometimes necessary in order to link with F77 libraries. Users
-+#   will also need to use AC_F77_DUMMY_MAIN (see the autoconf manual),
-+#   for the same reason.
-+#
-+#   Many libraries are searched for, from ATLAS to CXML to ESSL. The
-+#   user may also use --with-blas=<lib> in order to use some specific
-+#   BLAS library <lib>. In order to link successfully, however, be
-+#   aware that you will probably need to use the same Fortran compiler
-+#   (which can be set via the F77 env. var.) as was used to compile the
-+#   BLAS library.
-+#
-+#   ACTION-IF-FOUND is a list of shell commands to run if a BLAS
-+#   library is found, and ACTION-IF-NOT-FOUND is a list of commands to
-+#   run it if it is not found. If ACTION-IF-FOUND is not specified, the
-+#   default action will define HAVE_BLAS.
-+#
-+#   This macro requires autoconf 2.50 or later.
-+#
-+# LAST MODIFICATION
-+#
-+#   2007-07-29
-+#
-+# COPYLEFT
-+#
-+#   Copyright (c) 2007 Steven G. Johnson <stevenj@alum.mit.edu>
-+#
-+#   This program is free software: you can redistribute it and/or
-+#   modify it under the terms of the GNU General Public License as
-+#   published by the Free Software Foundation, either version 3 of the
-+#   License, or (at your option) any later version.
-+#
-+#   This program is distributed in the hope that it will be useful, but
-+#   WITHOUT ANY WARRANTY; without even the implied warranty of
-+#   MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
-+#   General Public License for more details.
-+#
-+#   You should have received a copy of the GNU General Public License
-+#   along with this program. If not, see
-+#   <http://www.gnu.org/licenses/>.
-+#
-+#   As a special exception, the respective Autoconf Macro's copyright
-+#   owner gives unlimited permission to copy, distribute and modify the
-+#   configure scripts that are the output of Autoconf when processing
-+#   the Macro. You need not follow the terms of the GNU General Public
-+#   License when using or distributing such scripts, even though
-+#   portions of the text of the Macro appear in them. The GNU General
-+#   Public License (GPL) does govern all other use of the material that
-+#   constitutes the Autoconf Macro.
-+#
-+#   This special exception to the GPL applies to versions of the
-+#   Autoconf Macro released by the Autoconf Macro Archive. When you
-+#   make and distribute a modified version of the Autoconf Macro, you
-+#   may extend this special exception to the GPL to apply to your
-+#   modified version as well.
-+
-+AC_DEFUN([ACX_BLAS], [
-+AC_PREREQ(2.50)
-+AC_REQUIRE([AC_F77_LIBRARY_LDFLAGS])
-+acx_blas_ok=no
-+
-+AC_ARG_WITH(blas,
-+	[AC_HELP_STRING([--with-blas=<lib>], [use BLAS library <lib>])])
-+case $with_blas in
-+	yes | "") ;;
-+	no) acx_blas_ok=disable ;;
-+	-* | */* | *.a | *.so | *.so.* | *.o) BLAS_LIBS="$with_blas" ;;
-+	*) BLAS_LIBS="-l$with_blas" ;;
-+esac
-+
-+# Get fortran linker names of BLAS functions to check for.
-+AC_F77_FUNC(sgemm)
-+AC_F77_FUNC(dgemm)
-+
-+acx_blas_save_LIBS="$LIBS"
-+LIBS="$LIBS $FLIBS"
-+
-+# First, check BLAS_LIBS environment variable
-+if test $acx_blas_ok = no; then
-+if test "x$BLAS_LIBS" != x; then
-+	save_LIBS="$LIBS"; LIBS="$BLAS_LIBS $LIBS"
-+	AC_MSG_CHECKING([for $sgemm in $BLAS_LIBS])
-+	AC_TRY_LINK_FUNC($sgemm, [acx_blas_ok=yes], [BLAS_LIBS=""])
-+	AC_MSG_RESULT($acx_blas_ok)
-+	LIBS="$save_LIBS"
-+fi
-+fi
-+
-+# BLAS linked to by default?  (happens on some supercomputers)
-+if test $acx_blas_ok = no; then
-+	save_LIBS="$LIBS"; LIBS="$LIBS"
-+	AC_CHECK_FUNC($sgemm, [acx_blas_ok=yes])
-+	LIBS="$save_LIBS"
-+fi
-+
-+# BLAS in ATLAS library? (http://math-atlas.sourceforge.net/)
-+if test $acx_blas_ok = no; then
-+	AC_CHECK_LIB(atlas, ATL_xerbla,
-+		[AC_CHECK_LIB(f77blas, $sgemm,
-+		[AC_CHECK_LIB(cblas, cblas_dgemm,
-+			[acx_blas_ok=yes
-+			 BLAS_LIBS="-lcblas -lf77blas -latlas"],
-+			[], [-lf77blas -latlas])],
-+			[], [-latlas])])
-+fi
-+
-+# BLAS in PhiPACK libraries? (requires generic BLAS lib, too)
-+if test $acx_blas_ok = no; then
-+	AC_CHECK_LIB(blas, $sgemm,
-+		[AC_CHECK_LIB(dgemm, $dgemm,
-+		[AC_CHECK_LIB(sgemm, $sgemm,
-+			[acx_blas_ok=yes; BLAS_LIBS="-lsgemm -ldgemm -lblas"],
-+			[], [-lblas])],
-+			[], [-lblas])])
-+fi
-+
-+# BLAS in Alpha CXML library?
-+if test $acx_blas_ok = no; then
-+	AC_CHECK_LIB(cxml, $sgemm, [acx_blas_ok=yes;BLAS_LIBS="-lcxml"])
-+fi
-+
-+# BLAS in Alpha DXML library? (now called CXML, see above)
-+if test $acx_blas_ok = no; then
-+	AC_CHECK_LIB(dxml, $sgemm, [acx_blas_ok=yes;BLAS_LIBS="-ldxml"])
-+fi
-+
-+# BLAS in Sun Performance library?
-+if test $acx_blas_ok = no; then
-+	if test "x$GCC" != xyes; then # only works with Sun CC
-+		AC_CHECK_LIB(sunmath, acosp,
-+			[AC_CHECK_LIB(sunperf, $sgemm,
-+        			[BLAS_LIBS="-xlic_lib=sunperf -lsunmath"
-+                                 acx_blas_ok=yes],[],[-lsunmath])])
-+	fi
-+fi
-+
-+# BLAS in SCSL library?  (SGI/Cray Scientific Library)
-+if test $acx_blas_ok = no; then
-+	AC_CHECK_LIB(scs, $sgemm, [acx_blas_ok=yes; BLAS_LIBS="-lscs"])
-+fi
-+
-+# BLAS in SGIMATH library?
-+if test $acx_blas_ok = no; then
-+	AC_CHECK_LIB(complib.sgimath, $sgemm,
-+		     [acx_blas_ok=yes; BLAS_LIBS="-lcomplib.sgimath"])
-+fi
-+
-+# BLAS in IBM ESSL library? (requires generic BLAS lib, too)
-+if test $acx_blas_ok = no; then
-+	AC_CHECK_LIB(blas, $sgemm,
-+		[AC_CHECK_LIB(essl, $sgemm,
-+			[acx_blas_ok=yes; BLAS_LIBS="-lessl -lblas"],
-+			[], [-lblas $FLIBS])])
-+fi
-+
-+# Generic BLAS library?
-+if test $acx_blas_ok = no; then
-+	AC_CHECK_LIB(blas, $sgemm, [acx_blas_ok=yes; BLAS_LIBS="-lblas"])
-+fi
-+
-+AC_SUBST(BLAS_LIBS)
-+
-+LIBS="$acx_blas_save_LIBS"
-+
-+# Finally, execute ACTION-IF-FOUND/ACTION-IF-NOT-FOUND:
-+if test x"$acx_blas_ok" = xyes; then
-+        ifelse([$1],,AC_DEFINE(HAVE_BLAS,1,[Define if you have a BLAS library.]),[$1])
-+        :
-+else
-+        acx_blas_ok=no
-+        $2
-+fi
-+])dnl ACX_BLAS
---- lapack.pc.in 	1970-01-01 01:00:00.000000000 +0100
-+++ lapack.pc.in	2007-11-09 17:46:18.000000000 +0000
-@@ -0,0 +1,11 @@
-+prefix=@prefix@
-+exec_prefix=@exec_prefix@
-+libdir=@libdir@
-+includedir=@includedir@
-+
-+Name: @PACKAGE_NAME@
-+Description: Linear Algebra PACKage FORTRAN 77 reference implementation
-+Version: @PACKAGE_VERSION@
-+Requires: blas
-+URL: http://www.netlib.org/lapack/
-+Libs: -llapack
---- SRC/Makefile.am 	1970-01-01 01:00:00.000000000 +0100
-+++ SRC/Makefile.am	2007-11-09 18:20:03.000000000 +0000
-@@ -0,0 +1,292 @@
-+lib_LTLIBRARIES = \
-+	liblapack.la
-+
-+noinst_LTLIBRARIES = \
-+	liblapack-noopt.la
-+
-+ALLAUX_SOURCES = ilaenv.f ieeeck.f lsamen.f xerbla.f iparmq.f \
-+	../INSTALL/ilaver.f ../INSTALL/lsame.f
-+
-+SINGLE_NOOPT_SOURCES = \
-+	slaruv.f ../INSTALL/slamch.f
-+
-+SINGLE_SOURCES = \
-+	sbdsdc.f \
-+	sbdsqr.f sdisna.f slabad.f slacpy.f sladiv.f slae2.f  slaebz.f \
-+	slaed0.f slaed1.f slaed2.f slaed3.f slaed4.f slaed5.f slaed6.f \
-+	slaed7.f slaed8.f slaed9.f slaeda.f slaev2.f slagtf.f \
-+	slagts.f slamrg.f slanst.f \
-+	slapy2.f slapy3.f slarnv.f \
-+	slarra.f slarrb.f slarrc.f slarrd.f slarre.f slarrf.f slarrj.f \
-+	slarrk.f slarrr.f slaneg.f \
-+	slartg.f slas2.f  slascl.f \
-+	slasd0.f slasd1.f slasd2.f slasd3.f slasd4.f slasd5.f slasd6.f \
-+	slasd7.f slasd8.f slasda.f slasdq.f slasdt.f \
-+	slaset.f slasq1.f slasq2.f slasq3.f slazq3.f slasq4.f slazq4.f slasq5.f slasq6.f \
-+	slasr.f  slasrt.f slassq.f slasv2.f spttrf.f sstebz.f sstedc.f \
-+	ssteqr.f ssterf.f slaisnan.f sisnan.f \
-+	../INSTALL/second_INT_CPU_TIME.f
-+
-+DOUBLE_NOOPT_SOURCES = \
-+	dlaruv.f ../INSTALL/dlamch.f
-+
-+DOUBLE_SOURCES = \
-+	dbdsdc.f \
-+	dbdsqr.f ddisna.f dlabad.f dlacpy.f dladiv.f dlae2.f  dlaebz.f \
-+	dlaed0.f dlaed1.f dlaed2.f dlaed3.f dlaed4.f dlaed5.f dlaed6.f \
-+	dlaed7.f dlaed8.f dlaed9.f dlaeda.f dlaev2.f dlagtf.f \
-+	dlagts.f dlamrg.f dlanst.f \
-+	dlapy2.f dlapy3.f dlarnv.f \
-+	dlarra.f dlarrb.f dlarrc.f dlarrd.f dlarre.f dlarrf.f dlarrj.f \
-+	dlarrk.f dlarrr.f dlaneg.f \
-+	dlartg.f dlas2.f  dlascl.f \
-+	dlasd0.f dlasd1.f dlasd2.f dlasd3.f dlasd4.f dlasd5.f dlasd6.f \
-+	dlasd7.f dlasd8.f dlasda.f dlasdq.f dlasdt.f \
-+	dlaset.f dlasq1.f dlasq2.f dlasq3.f dlazq3.f dlasq4.f dlazq4.f dlasq5.f dlasq6.f \
-+	dlasr.f  dlasrt.f dlassq.f dlasv2.f dpttrf.f dstebz.f dstedc.f \
-+	dsteqr.f dsterf.f dlaisnan.f disnan.f \
-+	../INSTALL/dsecnd_INT_CPU_TIME.f
-+
-+S_SOURCES = \
-+	sgbbrd.f sgbcon.f sgbequ.f sgbrfs.f sgbsv.f  \
-+	sgbsvx.f sgbtf2.f sgbtrf.f sgbtrs.f sgebak.f sgebal.f sgebd2.f \
-+	sgebrd.f sgecon.f sgeequ.f sgees.f  sgeesx.f sgeev.f  sgeevx.f \
-+	sgegs.f  sgegv.f  sgehd2.f sgehrd.f sgelq2.f sgelqf.f \
-+	sgels.f  sgelsd.f sgelss.f sgelsx.f sgelsy.f sgeql2.f sgeqlf.f \
-+	sgeqp3.f sgeqpf.f sgeqr2.f sgeqrf.f sgerfs.f sgerq2.f sgerqf.f \
-+	sgesc2.f sgesdd.f sgesv.f  sgesvd.f sgesvx.f sgetc2.f sgetf2.f \
-+	sgetrf.f sgetri.f \
-+	sgetrs.f sggbak.f sggbal.f sgges.f  sggesx.f sggev.f  sggevx.f \
-+	sggglm.f sgghrd.f sgglse.f sggqrf.f \
-+	sggrqf.f sggsvd.f sggsvp.f sgtcon.f sgtrfs.f sgtsv.f  \
-+	sgtsvx.f sgttrf.f sgttrs.f sgtts2.f shgeqz.f \
-+	shsein.f shseqr.f slabrd.f slacon.f slacn2.f \
-+	slaein.f slaexc.f slag2.f  slags2.f slagtm.f slagv2.f slahqr.f \
-+	slahrd.f slahr2.f slaic1.f slaln2.f slals0.f slalsa.f slalsd.f \
-+	slangb.f slange.f slangt.f slanhs.f slansb.f slansp.f \
-+	slansy.f slantb.f slantp.f slantr.f slanv2.f \
-+	slapll.f slapmt.f \
-+	slaqgb.f slaqge.f slaqp2.f slaqps.f slaqsb.f slaqsp.f slaqsy.f \
-+	slaqr0.f slaqr1.f slaqr2.f slaqr3.f slaqr4.f slaqr5.f \
-+	slaqtr.f slar1v.f slar2v.f \
-+	slarf.f  slarfb.f slarfg.f slarft.f slarfx.f slargv.f \
-+	slarrv.f slartv.f \
-+	slarz.f  slarzb.f slarzt.f slaswp.f slasy2.f slasyf.f \
-+	slatbs.f slatdf.f slatps.f slatrd.f slatrs.f slatrz.f slatzm.f \
-+	slauu2.f slauum.f sopgtr.f sopmtr.f sorg2l.f sorg2r.f \
-+	sorgbr.f sorghr.f sorgl2.f sorglq.f sorgql.f sorgqr.f sorgr2.f \
-+	sorgrq.f sorgtr.f sorm2l.f sorm2r.f \
-+	sormbr.f sormhr.f sorml2.f sormlq.f sormql.f sormqr.f sormr2.f \
-+	sormr3.f sormrq.f sormrz.f sormtr.f spbcon.f spbequ.f spbrfs.f \
-+	spbstf.f spbsv.f  spbsvx.f \
-+	spbtf2.f spbtrf.f spbtrs.f spocon.f spoequ.f sporfs.f sposv.f  \
-+	sposvx.f spotf2.f spotrf.f spotri.f spotrs.f sppcon.f sppequ.f \
-+	spprfs.f sppsv.f  sppsvx.f spptrf.f spptri.f spptrs.f sptcon.f \
-+	spteqr.f sptrfs.f sptsv.f  sptsvx.f spttrs.f sptts2.f srscl.f  \
-+	ssbev.f  ssbevd.f ssbevx.f ssbgst.f ssbgv.f  ssbgvd.f ssbgvx.f \
-+	ssbtrd.f sspcon.f sspev.f  sspevd.f sspevx.f sspgst.f \
-+	sspgv.f  sspgvd.f sspgvx.f ssprfs.f sspsv.f  sspsvx.f ssptrd.f \
-+	ssptrf.f ssptri.f ssptrs.f sstegr.f sstein.f sstev.f  sstevd.f sstevr.f \
-+	sstevx.f ssycon.f ssyev.f  ssyevd.f ssyevr.f ssyevx.f ssygs2.f \
-+	ssygst.f ssygv.f  ssygvd.f ssygvx.f ssyrfs.f ssysv.f  ssysvx.f \
-+	ssytd2.f ssytf2.f ssytrd.f ssytrf.f ssytri.f ssytrs.f stbcon.f \
-+	stbrfs.f stbtrs.f stgevc.f stgex2.f stgexc.f stgsen.f \
-+	stgsja.f stgsna.f stgsy2.f stgsyl.f stpcon.f stprfs.f stptri.f \
-+	stptrs.f \
-+	strcon.f strevc.f strexc.f strrfs.f strsen.f strsna.f strsyl.f \
-+	strti2.f strtri.f strtrs.f stzrqf.f stzrzf.f sstemr.f
-+
-+C_SOURCES = \
-+	cbdsqr.f cgbbrd.f cgbcon.f cgbequ.f cgbrfs.f cgbsv.f  cgbsvx.f \
-+	cgbtf2.f cgbtrf.f cgbtrs.f cgebak.f cgebal.f cgebd2.f cgebrd.f \
-+	cgecon.f cgeequ.f cgees.f  cgeesx.f cgeev.f  cgeevx.f \
-+	cgegs.f  cgegv.f  cgehd2.f cgehrd.f cgelq2.f cgelqf.f \
-+	cgels.f  cgelsd.f cgelss.f cgelsx.f cgelsy.f cgeql2.f cgeqlf.f cgeqp3.f \
-+	cgeqpf.f cgeqr2.f cgeqrf.f cgerfs.f cgerq2.f cgerqf.f \
-+	cgesc2.f cgesdd.f cgesv.f  cgesvd.f cgesvx.f cgetc2.f cgetf2.f cgetrf.f \
-+	cgetri.f cgetrs.f \
-+	cggbak.f cggbal.f cgges.f  cggesx.f cggev.f  cggevx.f cggglm.f \
-+	cgghrd.f cgglse.f cggqrf.f cggrqf.f \
-+	cggsvd.f cggsvp.f \
-+	cgtcon.f cgtrfs.f cgtsv.f  cgtsvx.f cgttrf.f cgttrs.f cgtts2.f chbev.f  \
-+	chbevd.f chbevx.f chbgst.f chbgv.f  chbgvd.f chbgvx.f chbtrd.f \
-+	checon.f cheev.f  cheevd.f cheevr.f cheevx.f chegs2.f chegst.f \
-+	chegv.f  chegvd.f chegvx.f cherfs.f chesv.f  chesvx.f chetd2.f \
-+	chetf2.f chetrd.f \
-+	chetrf.f chetri.f chetrs.f chgeqz.f chpcon.f chpev.f  chpevd.f \
-+	chpevx.f chpgst.f chpgv.f  chpgvd.f chpgvx.f chprfs.f chpsv.f  \
-+	chpsvx.f \
-+	chptrd.f chptrf.f chptri.f chptrs.f chsein.f chseqr.f clabrd.f \
-+	clacgv.f clacon.f clacn2.f clacp2.f clacpy.f clacrm.f clacrt.f cladiv.f \
-+	claed0.f claed7.f claed8.f \
-+	claein.f claesy.f claev2.f clags2.f clagtm.f \
-+	clahef.f clahqr.f \
-+	clahrd.f clahr2.f claic1.f clals0.f clalsa.f clalsd.f clangb.f clange.f clangt.f \
-+	clanhb.f clanhe.f \
-+	clanhp.f clanhs.f clanht.f clansb.f clansp.f clansy.f clantb.f \
-+	clantp.f clantr.f clapll.f clapmt.f clarcm.f claqgb.f claqge.f \
-+	claqhb.f claqhe.f claqhp.f claqp2.f claqps.f claqsb.f \
-+	claqr0.f claqr1.f claqr2.f claqr3.f claqr4.f claqr5.f \
-+	claqsp.f claqsy.f clar1v.f clar2v.f clarf.f  clarfb.f clarfg.f clarft.f \
-+	clarfx.f clargv.f clarnv.f clarrv.f clartg.f clartv.f \
-+	clarz.f  clarzb.f clarzt.f clascl.f claset.f clasr.f  classq.f \
-+	claswp.f clasyf.f clatbs.f clatdf.f clatps.f clatrd.f clatrs.f clatrz.f \
-+	clatzm.f clauu2.f clauum.f cpbcon.f cpbequ.f cpbrfs.f cpbstf.f cpbsv.f  \
-+	cpbsvx.f cpbtf2.f cpbtrf.f cpbtrs.f cpocon.f cpoequ.f cporfs.f \
-+	cposv.f  cposvx.f cpotf2.f cpotrf.f cpotri.f cpotrs.f cppcon.f \
-+	cppequ.f cpprfs.f cppsv.f  cppsvx.f cpptrf.f cpptri.f cpptrs.f \
-+	cptcon.f cpteqr.f cptrfs.f cptsv.f  cptsvx.f cpttrf.f cpttrs.f cptts2.f \
-+	crot.f   cspcon.f cspmv.f  cspr.f   csprfs.f cspsv.f  \
-+	cspsvx.f csptrf.f csptri.f csptrs.f csrscl.f cstedc.f \
-+	cstegr.f cstein.f csteqr.f csycon.f csymv.f  \
-+	csyr.f   csyrfs.f csysv.f  csysvx.f csytf2.f csytrf.f csytri.f \
-+	csytrs.f ctbcon.f ctbrfs.f ctbtrs.f ctgevc.f ctgex2.f \
-+	ctgexc.f ctgsen.f ctgsja.f ctgsna.f ctgsy2.f ctgsyl.f ctpcon.f \
-+	ctprfs.f ctptri.f \
-+	ctptrs.f ctrcon.f ctrevc.f ctrexc.f ctrrfs.f ctrsen.f ctrsna.f \
-+	ctrsyl.f ctrti2.f ctrtri.f ctrtrs.f ctzrqf.f ctzrzf.f cung2l.f cung2r.f \
-+	cungbr.f cunghr.f cungl2.f cunglq.f cungql.f cungqr.f cungr2.f \
-+	cungrq.f cungtr.f cunm2l.f cunm2r.f cunmbr.f cunmhr.f cunml2.f \
-+	cunmlq.f cunmql.f cunmqr.f cunmr2.f cunmr3.f cunmrq.f cunmrz.f \
-+	cunmtr.f cupgtr.f cupmtr.f icmax1.f scsum1.f cstemr.f
-+
-+D_SOURCES = \
-+	dgbbrd.f dgbcon.f dgbequ.f dgbrfs.f dgbsv.f  \
-+	dgbsvx.f dgbtf2.f dgbtrf.f dgbtrs.f dgebak.f dgebal.f dgebd2.f \
-+	dgebrd.f dgecon.f dgeequ.f dgees.f  dgeesx.f dgeev.f  dgeevx.f \
-+	dgegs.f  dgegv.f  dgehd2.f dgehrd.f dgelq2.f dgelqf.f \
-+	dgels.f  dgelsd.f dgelss.f dgelsx.f dgelsy.f dgeql2.f dgeqlf.f \
-+	dgeqp3.f dgeqpf.f dgeqr2.f dgeqrf.f dgerfs.f dgerq2.f dgerqf.f \
-+	dgesc2.f dgesdd.f dgesv.f  dgesvd.f dgesvx.f dgetc2.f dgetf2.f \
-+	dgetrf.f dgetri.f \
-+	dgetrs.f dggbak.f dggbal.f dgges.f  dggesx.f dggev.f  dggevx.f \
-+	dggglm.f dgghrd.f dgglse.f dggqrf.f \
-+	dggrqf.f dggsvd.f dggsvp.f dgtcon.f dgtrfs.f dgtsv.f  \
-+	dgtsvx.f dgttrf.f dgttrs.f dgtts2.f dhgeqz.f \
-+	dhsein.f dhseqr.f dlabrd.f dlacon.f dlacn2.f \
-+	dlaein.f dlaexc.f dlag2.f  dlags2.f dlagtm.f dlagv2.f dlahqr.f \
-+	dlahrd.f dlahr2.f dlaic1.f dlaln2.f dlals0.f dlalsa.f dlalsd.f \
-+	dlangb.f dlange.f dlangt.f dlanhs.f dlansb.f dlansp.f \
-+	dlansy.f dlantb.f dlantp.f dlantr.f dlanv2.f \
-+	dlapll.f dlapmt.f \
-+	dlaqgb.f dlaqge.f dlaqp2.f dlaqps.f dlaqsb.f dlaqsp.f dlaqsy.f \
-+	dlaqr0.f dlaqr1.f dlaqr2.f dlaqr3.f dlaqr4.f dlaqr5.f \
-+	dlaqtr.f dlar1v.f dlar2v.f \
-+	dlarf.f  dlarfb.f dlarfg.f dlarft.f dlarfx.f dlargv.f \
-+	dlarrv.f dlartv.f \
-+	dlarz.f  dlarzb.f dlarzt.f dlaswp.f dlasy2.f dlasyf.f \
-+	dlatbs.f dlatdf.f dlatps.f dlatrd.f dlatrs.f dlatrz.f dlatzm.f dlauu2.f \
-+	dlauum.f dopgtr.f dopmtr.f dorg2l.f dorg2r.f \
-+	dorgbr.f dorghr.f dorgl2.f dorglq.f dorgql.f dorgqr.f dorgr2.f \
-+	dorgrq.f dorgtr.f dorm2l.f dorm2r.f \
-+	dormbr.f dormhr.f dorml2.f dormlq.f dormql.f dormqr.f dormr2.f \
-+	dormr3.f dormrq.f dormrz.f dormtr.f dpbcon.f dpbequ.f dpbrfs.f \
-+	dpbstf.f dpbsv.f  dpbsvx.f \
-+	dpbtf2.f dpbtrf.f dpbtrs.f dpocon.f dpoequ.f dporfs.f dposv.f  \
-+	dposvx.f dpotf2.f dpotrf.f dpotri.f dpotrs.f dppcon.f dppequ.f \
-+	dpprfs.f dppsv.f  dppsvx.f dpptrf.f dpptri.f dpptrs.f dptcon.f \
-+	dpteqr.f dptrfs.f dptsv.f  dptsvx.f dpttrs.f dptts2.f drscl.f  \
-+	dsbev.f  dsbevd.f dsbevx.f dsbgst.f dsbgv.f  dsbgvd.f dsbgvx.f \
-+	dsbtrd.f  dspcon.f dspev.f  dspevd.f dspevx.f dspgst.f \
-+	dspgv.f  dspgvd.f dspgvx.f dsprfs.f dspsv.f  dspsvx.f dsptrd.f \
-+	dsptrf.f dsptri.f dsptrs.f dstegr.f dstein.f dstev.f  dstevd.f dstevr.f \
-+	dstevx.f dsycon.f dsyev.f  dsyevd.f dsyevr.f \
-+	dsyevx.f dsygs2.f dsygst.f dsygv.f  dsygvd.f dsygvx.f dsyrfs.f \
-+	dsysv.f  dsysvx.f \
-+	dsytd2.f dsytf2.f dsytrd.f dsytrf.f dsytri.f dsytrs.f dtbcon.f \
-+	dtbrfs.f dtbtrs.f dtgevc.f dtgex2.f dtgexc.f dtgsen.f \
-+	dtgsja.f dtgsna.f dtgsy2.f dtgsyl.f dtpcon.f dtprfs.f dtptri.f \
-+	dtptrs.f \
-+	dtrcon.f dtrevc.f dtrexc.f dtrrfs.f dtrsen.f dtrsna.f dtrsyl.f \
-+	dtrti2.f dtrtri.f dtrtrs.f dtzrqf.f dtzrzf.f dstemr.f \
-+	dsgesv.f dlag2s.f slag2d.f
-+
-+Z_SOURCES = \
-+	zbdsqr.f zgbbrd.f zgbcon.f zgbequ.f zgbrfs.f zgbsv.f  zgbsvx.f \
-+	zgbtf2.f zgbtrf.f zgbtrs.f zgebak.f zgebal.f zgebd2.f zgebrd.f \
-+	zgecon.f zgeequ.f zgees.f  zgeesx.f zgeev.f  zgeevx.f \
-+	zgegs.f  zgegv.f  zgehd2.f zgehrd.f zgelq2.f zgelqf.f \
-+	zgels.f  zgelsd.f zgelss.f zgelsx.f zgelsy.f zgeql2.f zgeqlf.f zgeqp3.f \
-+	zgeqpf.f zgeqr2.f zgeqrf.f zgerfs.f zgerq2.f zgerqf.f \
-+	zgesc2.f zgesdd.f zgesv.f  zgesvd.f zgesvx.f zgetc2.f zgetf2.f zgetrf.f \
-+	zgetri.f zgetrs.f \
-+	zggbak.f zggbal.f zgges.f  zggesx.f zggev.f  zggevx.f zggglm.f \
-+	zgghrd.f zgglse.f zggqrf.f zggrqf.f \
-+	zggsvd.f zggsvp.f \
-+	zgtcon.f zgtrfs.f zgtsv.f  zgtsvx.f zgttrf.f zgttrs.f zgtts2.f zhbev.f  \
-+	zhbevd.f zhbevx.f zhbgst.f zhbgv.f  zhbgvd.f zhbgvx.f zhbtrd.f \
-+	zhecon.f zheev.f  zheevd.f zheevr.f zheevx.f zhegs2.f zhegst.f \
-+	zhegv.f  zhegvd.f zhegvx.f zherfs.f zhesv.f  zhesvx.f zhetd2.f \
-+	zhetf2.f zhetrd.f \
-+	zhetrf.f zhetri.f zhetrs.f zhgeqz.f zhpcon.f zhpev.f  zhpevd.f \
-+	zhpevx.f zhpgst.f zhpgv.f  zhpgvd.f zhpgvx.f zhprfs.f zhpsv.f  \
-+	zhpsvx.f \
-+	zhptrd.f zhptrf.f zhptri.f zhptrs.f zhsein.f zhseqr.f zlabrd.f \
-+	zlacgv.f zlacon.f zlacn2.f zlacp2.f zlacpy.f zlacrm.f zlacrt.f zladiv.f \
-+	zlaed0.f zlaed7.f zlaed8.f \
-+	zlaein.f zlaesy.f zlaev2.f zlags2.f zlagtm.f \
-+	zlahef.f zlahqr.f \
-+	zlahrd.f zlahr2.f zlaic1.f zlals0.f zlalsa.f zlalsd.f zlangb.f zlange.f \
-+	zlangt.f zlanhb.f \
-+	zlanhe.f \
-+	zlanhp.f zlanhs.f zlanht.f zlansb.f zlansp.f zlansy.f zlantb.f \
-+	zlantp.f zlantr.f zlapll.f zlapmt.f zlaqgb.f zlaqge.f \
-+	zlaqhb.f zlaqhe.f zlaqhp.f zlaqp2.f zlaqps.f zlaqsb.f \
-+	zlaqr0.f zlaqr1.f zlaqr2.f zlaqr3.f zlaqr4.f zlaqr5.f \
-+	zlaqsp.f zlaqsy.f zlar1v.f zlar2v.f zlarcm.f zlarf.f  zlarfb.f \
-+	zlarfg.f zlarft.f \
-+	zlarfx.f zlargv.f zlarnv.f zlarrv.f zlartg.f zlartv.f \
-+	zlarz.f  zlarzb.f zlarzt.f zlascl.f zlaset.f zlasr.f  \
-+	zlassq.f zlaswp.f zlasyf.f \
-+	zlatbs.f zlatdf.f zlatps.f zlatrd.f zlatrs.f zlatrz.f zlatzm.f zlauu2.f \
-+	zlauum.f zpbcon.f zpbequ.f zpbrfs.f zpbstf.f zpbsv.f  \
-+	zpbsvx.f zpbtf2.f zpbtrf.f zpbtrs.f zpocon.f zpoequ.f zporfs.f \
-+	zposv.f  zposvx.f zpotf2.f zpotrf.f zpotri.f zpotrs.f zppcon.f \
-+	zppequ.f zpprfs.f zppsv.f  zppsvx.f zpptrf.f zpptri.f zpptrs.f \
-+	zptcon.f zpteqr.f zptrfs.f zptsv.f  zptsvx.f zpttrf.f zpttrs.f zptts2.f \
-+	zrot.f   zspcon.f zspmv.f  zspr.f   zsprfs.f zspsv.f  \
-+	zspsvx.f zsptrf.f zsptri.f zsptrs.f zdrscl.f zstedc.f \
-+	zstegr.f zstein.f zsteqr.f zsycon.f zsymv.f  \
-+	zsyr.f   zsyrfs.f zsysv.f  zsysvx.f zsytf2.f zsytrf.f zsytri.f \
-+	zsytrs.f ztbcon.f ztbrfs.f ztbtrs.f ztgevc.f ztgex2.f \
-+	ztgexc.f ztgsen.f ztgsja.f ztgsna.f ztgsy2.f ztgsyl.f ztpcon.f \
-+	ztprfs.f ztptri.f \
-+	ztptrs.f ztrcon.f ztrevc.f ztrexc.f ztrrfs.f ztrsen.f ztrsna.f \
-+	ztrsyl.f ztrti2.f ztrtri.f ztrtrs.f ztzrqf.f ztzrzf.f zung2l.f \
-+	zung2r.f zungbr.f zunghr.f zungl2.f zunglq.f zungql.f zungqr.f zungr2.f \
-+	zungrq.f zungtr.f zunm2l.f zunm2r.f zunmbr.f zunmhr.f zunml2.f \
-+	zunmlq.f zunmql.f zunmqr.f zunmr2.f zunmr3.f zunmrq.f zunmrz.f \
-+	zunmtr.f zupgtr.f \
-+	zupmtr.f izmax1.f dzsum1.f zstemr.f \
-+	zcgesv.f zlag2c.f clag2z.f
-+
-+liblapack_noopt_la_FFLAGS = \
-+	$(NOOPT_FFLAGS)
-+
-+liblapack_noopt_la_SOURCES = \
-+	$(SINGLE_NOOPT_SOURCES) \
-+	$(DOUBLE_NOOPT_SOURCES)
-+
-+liblapack_la_LIBADD = liblapack-noopt.la @BLAS_LIBS@
-+
-+liblapack_la_SOURCES = \
-+	$(ALLAUX_SOURCES) \
-+	$(SINGLE_SOURCES) \
-+	$(DOUBLE_SOURCES) \
-+	$(S_SOURCES) \
-+	$(C_SOURCES) \
-+	$(D_SOURCES) \
-+	$(Z_SOURCES)
-+
-+# Automake doesn't have a way to build with no optimization
-+# See http://sources.redhat.com/ml/automake/2002-08/msg00082.html
-+# This is the automake-produced rule with $(FFLAGS) removed
-+liblapack_noopt_la-slaruv.lo: slaruv.f
-+	$(LIBTOOL) --tag=F77 --mode=compile $(F77) $(liblapack_noopt_la_FFLAGS) -c -o liblapack_noopt_la-slaruv.lo `test -f 'slaruv.f' || echo '$(srcdir)/'`slaruv.f
-+liblapack_noopt_la-dlaruv.lo: dlaruv.f
-+	$(LIBTOOL) --tag=F77 --mode=compile $(F77) $(liblapack_noopt_la_FFLAGS) -c -o liblapack_noopt_la-dlaruv.lo `test -f 'dlaruv.f' || echo '$(srcdir)/'`dlaruv.f
-+
-+liblapack_noopt_la-slamch.lo: ../INSTALL/slamch.f
-+	$(LIBTOOL) --tag=F77 --mode=compile $(F77) $(liblapack_noopt_la_FFLAGS) -c -o liblapack_noopt_la-slamch.lo `test -f '../INSTALL/slamch.f' || echo '$(srcdir)/'`../INSTALL/slamch.f
-+liblapack_noopt_la-dlamch.lo: ../INSTALL/dlamch.f
-+	$(LIBTOOL) --tag=F77 --mode=compile $(F77) $(liblapack_noopt_la_FFLAGS) -c -o liblapack_noopt_la-dlamch.lo `test -f '../INSTALL/dlamch.f' || echo '$(srcdir)/'`../INSTALL/dlamch.f
---- INSTALL/Makefile.am 	1970-01-01 01:00:00.000000000 +0100
-+++ INSTALL/Makefile.am	2007-11-09 17:46:18.000000000 +0000
-@@ -0,0 +1,23 @@
-+check_PROGRAMS = \
-+	testlsame \
-+	testslamch \
-+	testdlamch \
-+	testsecond \
-+	testdsecnd \
-+	testieee
-+
-+TESTS = $(check_PROGRAMS)
-+
-+testlsame_SOURCES = lsame.f lsametst.f
-+testslamch_SOURCES = slamch.f lsame.f slamchtst.f
-+testdlamch_SOURCES = dlamch.f lsame.f dlamchtst.f
-+testsecond_SOURCES = second_INT_CPU_TIME.f secondtst.f
-+testdsecnd_SOURCES = dsecnd_INT_CPU_TIME.f dsecndtst.f
-+testieee_SOURCES = tstiee.f
-+
-+EXTRA_DIST = \
-+	lawn81.pdf \
-+	lawn81.ps \
-+	lawn81.tex \
-+	org2.ps \
-+	psfig.tex
diff --git a/sci-libs/lapack-atlas/lapack-atlas-3.8.0.ebuild b/sci-libs/lapack-atlas/lapack-atlas-3.8.0.ebuild
index 854da005deb6..36be70a183c7 100644
--- a/sci-libs/lapack-atlas/lapack-atlas-3.8.0.ebuild
+++ b/sci-libs/lapack-atlas/lapack-atlas-3.8.0.ebuild
@@ -1,6 +1,6 @@
 # Copyright 1999-2008 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-libs/lapack-atlas/lapack-atlas-3.8.0.ebuild,v 1.14 2008/08/28 09:51:15 armin76 Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-libs/lapack-atlas/lapack-atlas-3.8.0.ebuild,v 1.15 2008/11/28 09:37:05 bicatali Exp $
 
 inherit eutils flag-o-matic toolchain-funcs fortran autotools versionator
 
@@ -16,7 +16,8 @@ HOMEPAGE="http://math-atlas.sourceforge.net/"
 SRC_URI1="mirror://sourceforge/math-atlas/${MY_PN}${PV}.tar.bz2"
 SRC_URI2="http://www.netlib.org/${L_PN}/${L_PN}-lite-${L_PV}.tgz"
 SRC_URI="${SRC_URI1} ${SRC_URI2}
-	mirror://gentoo/${MY_PN}-${PATCH_V}-shared-libs.patch.bz2"
+	mirror://gentoo/${MY_PN}-${PATCH_V}-shared-libs.patch.bz2
+	mirror://gentoo/${L_PN}-reference-${L_PV}-autotools.patch.bz2"
 
 SLOT="0"
 IUSE="doc"
@@ -83,7 +84,7 @@ src_unpack() {
 		|| die "configure failed"
 
 	cd "${S_LAPACK}"
-	epatch "${FILESDIR}"/${L_PN}-reference-${L_PV}-autotools.patch
+	epatch "${WORKDIR}"/${L_PN}-reference-${L_PV}-autotools.patch
 	epatch "${FILESDIR}"/${L_PN}-reference-${L_PV}-test-fix.patch
 	eautoreconf
 
diff --git a/sci-libs/lapack-atlas/lapack-atlas-3.8.2.ebuild b/sci-libs/lapack-atlas/lapack-atlas-3.8.2.ebuild
index 01844f6cd010..5a9ed390f68b 100644
--- a/sci-libs/lapack-atlas/lapack-atlas-3.8.2.ebuild
+++ b/sci-libs/lapack-atlas/lapack-atlas-3.8.2.ebuild
@@ -1,6 +1,6 @@
 # Copyright 1999-2008 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-libs/lapack-atlas/lapack-atlas-3.8.2.ebuild,v 1.1 2008/06/07 16:44:36 markusle Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-libs/lapack-atlas/lapack-atlas-3.8.2.ebuild,v 1.2 2008/11/28 09:37:05 bicatali Exp $
 
 inherit eutils flag-o-matic toolchain-funcs fortran autotools versionator
 
@@ -16,7 +16,8 @@ HOMEPAGE="http://math-atlas.sourceforge.net/"
 SRC_URI1="mirror://sourceforge/math-atlas/${MY_PN}${PV}.tar.bz2"
 SRC_URI2="http://www.netlib.org/${L_PN}/${L_PN}-lite-${L_PV}.tgz"
 SRC_URI="${SRC_URI1} ${SRC_URI2}
-	mirror://gentoo/${MY_PN}-${PATCH_V}-shared-libs.patch.bz2"
+	mirror://gentoo/${MY_PN}-${PATCH_V}-shared-libs.patch.bz2
+	mirror://gentoo/${L_PN}-reference-${L_PV}-autotools.patch.bz2"
 
 SLOT="0"
 IUSE="doc"
@@ -80,7 +81,7 @@ src_unpack() {
 		|| die "configure failed"
 
 	cd "${S_LAPACK}"
-	epatch "${FILESDIR}"/${L_PN}-reference-${L_PV}-autotools.patch
+	epatch "${WORKDIR}"/${L_PN}-reference-${L_PV}-autotools.patch
 	epatch "${FILESDIR}"/${L_PN}-reference-${L_PV}-test-fix.patch
 	eautoreconf
 
diff --git a/sci-libs/lapack-atlas/lapack-atlas-3.9.3.ebuild b/sci-libs/lapack-atlas/lapack-atlas-3.9.3.ebuild
index f64304a22584..b9206337aaf9 100644
--- a/sci-libs/lapack-atlas/lapack-atlas-3.9.3.ebuild
+++ b/sci-libs/lapack-atlas/lapack-atlas-3.9.3.ebuild
@@ -1,6 +1,6 @@
 # Copyright 1999-2008 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-libs/lapack-atlas/lapack-atlas-3.9.3.ebuild,v 1.2 2008/08/28 09:51:15 armin76 Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-libs/lapack-atlas/lapack-atlas-3.9.3.ebuild,v 1.3 2008/11/28 09:37:05 bicatali Exp $
 
 inherit eutils flag-o-matic toolchain-funcs fortran autotools versionator
 
@@ -16,7 +16,8 @@ HOMEPAGE="http://math-atlas.sourceforge.net/"
 SRC_URI1="mirror://sourceforge/math-atlas/${MY_PN}${PV}.tar.bz2"
 SRC_URI2="http://www.netlib.org/${L_PN}/${L_PN}-lite-${L_PV}.tgz"
 SRC_URI="${SRC_URI1} ${SRC_URI2}
-	mirror://gentoo/${MY_PN}-${PV}-shared-libs.patch.bz2"
+	mirror://gentoo/${MY_PN}-${PV}-shared-libs.patch.bz2
+	mirror://gentoo/${L_PN}-reference-${L_PV}-autotools.patch.bz2"
 
 SLOT="0"
 IUSE="doc"
@@ -93,7 +94,7 @@ src_unpack() {
 		|| die "configure failed"
 
 	cd "${S_LAPACK}"
-	epatch "${FILESDIR}"/${L_PN}-reference-${L_PV}-autotools.patch
+	epatch "${WORKDIR}"/${L_PN}-reference-${L_PV}-autotools.patch
 	epatch "${FILESDIR}"/${L_PN}-reference-${L_PV}-test-fix.patch
 	eautoreconf