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authorJustin Lecher <jlec@gentoo.org>2012-06-28 16:36:08 +0000
committerJustin Lecher <jlec@gentoo.org>2012-06-28 16:36:08 +0000
commitd6207ef8b719c109a189dd1aca58ce23b098af77 (patch)
treee598a76edd89ab0d81f791c14c0dc5602d210f43 /sci-biology
parentsci-biology/hmmer: Fix patch, screwed VCS tags, #423983 (diff)
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fix patch again
(Portage version: 2.2.0_alpha114/cvs/Linux x86_64)
Diffstat (limited to 'sci-biology')
-rw-r--r--sci-biology/hmmer/ChangeLog6
-rw-r--r--sci-biology/hmmer/files/hmmer-3.0-perl-5.16.patch10
2 files changed, 10 insertions, 6 deletions
diff --git a/sci-biology/hmmer/ChangeLog b/sci-biology/hmmer/ChangeLog
index eed761671330..8173cf94d04d 100644
--- a/sci-biology/hmmer/ChangeLog
+++ b/sci-biology/hmmer/ChangeLog
@@ -1,6 +1,10 @@
# ChangeLog for sci-biology/hmmer
# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/hmmer/ChangeLog,v 1.33 2012/06/28 16:34:57 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/hmmer/ChangeLog,v 1.34 2012/06/28 16:36:08 jlec Exp $
+
+ 28 Jun 2012; Justin Lecher <jlec@gentoo.org> files/hmmer-3.0-perl-5.16.patch,
+ metadata.xml:
+ fix patch again
28 Jun 2012; Justin Lecher <jlec@gentoo.org> files/hmmer-3.0-perl-5.16.patch:
Fix patch, screwed VCS tags, #423983
diff --git a/sci-biology/hmmer/files/hmmer-3.0-perl-5.16.patch b/sci-biology/hmmer/files/hmmer-3.0-perl-5.16.patch
index c6ba6da03776..7bec08c2b0ba 100644
--- a/sci-biology/hmmer/files/hmmer-3.0-perl-5.16.patch
+++ b/sci-biology/hmmer/files/hmmer-3.0-perl-5.16.patch
@@ -28,7 +28,7 @@ index a4dc126..b61fa7a 100755
+++ b/easel/devkit/esl-dependencies
@@ -13,8 +13,8 @@
# SRE, Mon Jun 11 11:15:31 2007
- # SVN $Id: hmmer-3.0-perl-5.16.patch,v 1.2 2012/06/28 16:34:57 jlec Exp $
+ # SVN $Id: hmmer-3.0-perl-5.16.patch,v 1.3 2012/06/28 16:36:08 jlec Exp $
-require "getopts.pl"
-&Getopts('1afr');
@@ -43,7 +43,7 @@ index af3adf6..0cdb458 100755
+++ b/easel/devkit/sqc
@@ -205,12 +205,11 @@
# SRE, Tue Aug 6 11:16:39 2002
- # SVN $Id: hmmer-3.0-perl-5.16.patch,v 1.2 2012/06/28 16:34:57 jlec Exp $
+ # SVN $Id: hmmer-3.0-perl-5.16.patch,v 1.3 2012/06/28 16:36:08 jlec Exp $
-require "getopts.pl";
-require "importenv.pl";
@@ -74,7 +74,7 @@ index 9c77791..024ed34
@@ -16,9 +16,9 @@
#
# SRE, Thu Mar 1 19:22:57 2007 (Janelia)
- # SVN $Id: hmmer-3.0-perl-5.16.patch,v 1.2 2012/06/28 16:34:57 jlec Exp $
+ # SVN $Id: hmmer-3.0-perl-5.16.patch,v 1.3 2012/06/28 16:36:08 jlec Exp $
-require "getopts.pl";
+use Getopt::Std;
$have_sloccount = 1;
@@ -89,7 +89,7 @@ index 757854d..a9a8902 100755
+++ b/easel/testsuite/driver_report.pl
@@ -25,8 +25,8 @@
# SRE, Fri Mar 2 10:01:44 2007 (Janelia)
- # SVN $Id: hmmer-3.0-perl-5.16.patch,v 1.2 2012/06/28 16:34:57 jlec Exp $
+ # SVN $Id: hmmer-3.0-perl-5.16.patch,v 1.3 2012/06/28 16:36:08 jlec Exp $
-require "getopts.pl";
-&Getopts('c');
@@ -107,7 +107,7 @@ index 186a392..07026a0
@@ -10,8 +10,8 @@
#
# SRE, Fri Mar 2 08:37:48 2007 [Janelia]
- # SVN $Id: hmmer-3.0-perl-5.16.patch,v 1.2 2012/06/28 16:34:57 jlec Exp $
+ # SVN $Id: hmmer-3.0-perl-5.16.patch,v 1.3 2012/06/28 16:36:08 jlec Exp $
-require "getopts.pl";
-&Getopts('c');
+use Getopt::Std;